Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3089 and GFF3090 are separated by 12 nucleotides GFF3090 and GFF3091 are separated by 18 nucleotides GFF3091 and GFF3092 are separated by 72 nucleotides
GFF3089 - Amidophosphoribosyltransferase (EC 2.4.2.14), at 519,510 to 521,012
GFF3089
GFF3090 - Colicin V production protein, at 521,025 to 521,510
GFF3090
GFF3091 - Septum-associated cell division protein DedD, at 521,529 to 522,410
GFF3091
GFF3092 - Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17), at 522,483 to 523,778
GFF3092
Position (kb) 521
522 Strain fitness (log2 ratio) -1
0
1 at 520.034 kb on - strand, within GFF3089 at 520.247 kb on - strand, within GFF3089 at 521.035 kb on + strand at 521.036 kb on - strand at 521.036 kb on - strand at 521.036 kb on - strand at 521.036 kb on - strand at 521.036 kb on - strand at 521.213 kb on + strand, within GFF3090 at 521.213 kb on + strand, within GFF3090 at 521.213 kb on + strand, within GFF3090 at 521.214 kb on - strand, within GFF3090 at 521.214 kb on - strand, within GFF3090 at 521.422 kb on + strand, within GFF3090 at 521.424 kb on + strand, within GFF3090 at 521.425 kb on - strand, within GFF3090 at 521.425 kb on - strand, within GFF3090 at 521.425 kb on - strand, within GFF3090 at 521.530 kb on + strand at 521.530 kb on + strand at 521.530 kb on + strand at 521.530 kb on + strand at 521.530 kb on + strand at 521.530 kb on + strand at 521.530 kb on + strand at 521.530 kb on + strand at 521.530 kb on + strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.531 kb on - strand at 521.665 kb on + strand, within GFF3091 at 521.665 kb on + strand, within GFF3091 at 521.665 kb on + strand, within GFF3091 at 521.665 kb on + strand, within GFF3091 at 521.665 kb on + strand, within GFF3091 at 521.665 kb on + strand, within GFF3091 at 521.665 kb on + strand, within GFF3091 at 521.665 kb on + strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091 at 521.666 kb on - strand, within GFF3091
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 520,034 - GFF3089 0.35 -0.6 520,247 - GFF3089 0.49 +1.3 521,035 + -1.5 521,036 - -0.1 521,036 - +0.2 521,036 - -0.1 521,036 - -0.7 521,036 - +0.5 521,213 + GFF3090 0.39 -1.6 521,213 + GFF3090 0.39 -0.2 521,213 + GFF3090 0.39 +1.1 521,214 - GFF3090 0.39 -0.4 521,214 - GFF3090 0.39 +0.9 521,422 + GFF3090 0.82 -0.6 521,424 + GFF3090 0.82 -1.6 521,425 - GFF3090 0.82 -0.4 521,425 - GFF3090 0.82 +0.6 521,425 - GFF3090 0.82 +0.3 521,530 + -0.3 521,530 + -1.0 521,530 + +0.3 521,530 + +0.3 521,530 + -0.5 521,530 + -1.5 521,530 + -1.5 521,530 + -1.5 521,530 + -0.0 521,531 - +0.2 521,531 - -0.1 521,531 - -1.2 521,531 - -0.1 521,531 - -0.2 521,531 - +0.9 521,531 - -0.3 521,531 - -0.5 521,531 - -0.6 521,531 - +0.0 521,531 - -1.6 521,665 + GFF3091 0.15 +1.2 521,665 + GFF3091 0.15 -0.9 521,665 + GFF3091 0.15 +0.3 521,665 + GFF3091 0.15 -0.5 521,665 + GFF3091 0.15 -0.2 521,665 + GFF3091 0.15 +0.2 521,665 + GFF3091 0.15 +0.3 521,665 + GFF3091 0.15 +0.6 521,666 - GFF3091 0.16 -0.2 521,666 - GFF3091 0.16 +0.3 521,666 - GFF3091 0.16 -1.0 521,666 - GFF3091 0.16 +0.9 521,666 - GFF3091 0.16 -0.1 521,666 - GFF3091 0.16 -0.5 521,666 - GFF3091 0.16 -0.0 521,666 - GFF3091 0.16 -1.3 521,666 - GFF3091 0.16 +0.5 521,666 - GFF3091 0.16 -0.2 521,666 - GFF3091 0.16 +0.8
Or see this region's nucleotide sequence