Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3035 and GFF3036 are separated by 9 nucleotides GFF3036 and GFF3037 are separated by 6 nucleotides GFF3037 and GFF3038 are separated by 11 nucleotides GFF3038 and GFF3039 are separated by 250 nucleotides
GFF3035 - Ferrichrome-iron receptor, at 467,378 to 469,573
GFF3035
GFF3036 - no description, at 469,583 to 470,005
GFF3036
GFF3037 - no description, at 470,012 to 470,479
GFF3037
GFF3038 - hypothetical protein, at 470,491 to 471,174
GFF3038
GFF3039 - Two-component transcriptional response regulator, LuxR family, at 471,425 to 472,204
GFF3039
Position (kb) 470
471
472 Strain fitness (log2 ratio) -1
0
1
2 at 469.517 kb on + strand at 469.517 kb on + strand at 469.571 kb on + strand at 469.710 kb on - strand, within GFF3036 at 469.721 kb on + strand, within GFF3036 at 469.743 kb on - strand, within GFF3036 at 469.743 kb on - strand, within GFF3036 at 469.743 kb on - strand, within GFF3036 at 469.895 kb on + strand, within GFF3036 at 469.896 kb on - strand, within GFF3036 at 470.351 kb on + strand, within GFF3037 at 470.351 kb on + strand, within GFF3037 at 470.351 kb on + strand, within GFF3037 at 470.352 kb on - strand, within GFF3037 at 470.812 kb on + strand, within GFF3038 at 470.848 kb on + strand, within GFF3038 at 470.950 kb on - strand, within GFF3038 at 470.950 kb on - strand, within GFF3038 at 470.950 kb on - strand, within GFF3038 at 470.988 kb on - strand, within GFF3038 at 471.465 kb on + strand at 471.466 kb on - strand at 471.466 kb on - strand at 471.466 kb on - strand at 471.741 kb on + strand, within GFF3039 at 471.876 kb on + strand, within GFF3039 at 471.876 kb on + strand, within GFF3039 at 471.877 kb on - strand, within GFF3039 at 471.877 kb on - strand, within GFF3039 at 472.032 kb on + strand, within GFF3039
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 469,517 + -0.8 469,517 + -0.8 469,571 + +0.1 469,710 - GFF3036 0.30 -0.5 469,721 + GFF3036 0.33 +0.1 469,743 - GFF3036 0.38 +1.5 469,743 - GFF3036 0.38 +1.8 469,743 - GFF3036 0.38 +1.0 469,895 + GFF3036 0.74 -0.8 469,896 - GFF3036 0.74 +0.8 470,351 + GFF3037 0.72 +0.1 470,351 + GFF3037 0.72 -0.1 470,351 + GFF3037 0.72 -0.8 470,352 - GFF3037 0.73 -1.2 470,812 + GFF3038 0.47 -1.1 470,848 + GFF3038 0.52 -1.2 470,950 - GFF3038 0.67 -1.3 470,950 - GFF3038 0.67 -0.8 470,950 - GFF3038 0.67 -0.6 470,988 - GFF3038 0.73 +0.0 471,465 + -0.0 471,466 - +0.0 471,466 - -0.9 471,466 - -0.3 471,741 + GFF3039 0.41 +0.2 471,876 + GFF3039 0.58 -0.4 471,876 + GFF3039 0.58 -0.5 471,877 - GFF3039 0.58 +1.2 471,877 - GFF3039 0.58 +1.5 472,032 + GFF3039 0.78 +2.4
Or see this region's nucleotide sequence