Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3035 and GFF3036 are separated by 9 nucleotides GFF3036 and GFF3037 are separated by 6 nucleotides GFF3037 and GFF3038 are separated by 11 nucleotides
GFF3035 - Ferrichrome-iron receptor, at 467,378 to 469,573
GFF3035
GFF3036 - no description, at 469,583 to 470,005
GFF3036
GFF3037 - no description, at 470,012 to 470,479
GFF3037
GFF3038 - hypothetical protein, at 470,491 to 471,174
GFF3038
Position (kb) 469
470
471 Strain fitness (log2 ratio) -1
0
1
2 at 468.614 kb on + strand, within GFF3035 at 468.632 kb on + strand, within GFF3035 at 468.847 kb on + strand, within GFF3035 at 468.848 kb on - strand, within GFF3035 at 468.848 kb on - strand, within GFF3035 at 468.851 kb on + strand, within GFF3035 at 468.920 kb on + strand, within GFF3035 at 468.929 kb on + strand, within GFF3035 at 468.929 kb on + strand, within GFF3035 at 468.930 kb on - strand, within GFF3035 at 468.930 kb on - strand, within GFF3035 at 468.930 kb on - strand, within GFF3035 at 469.016 kb on + strand, within GFF3035 at 469.095 kb on - strand, within GFF3035 at 469.139 kb on + strand, within GFF3035 at 469.139 kb on + strand, within GFF3035 at 469.241 kb on + strand, within GFF3035 at 469.242 kb on - strand, within GFF3035 at 469.242 kb on - strand, within GFF3035 at 469.299 kb on - strand, within GFF3035 at 469.346 kb on + strand, within GFF3035 at 469.347 kb on - strand, within GFF3035 at 469.425 kb on - strand at 469.517 kb on + strand at 469.517 kb on + strand at 469.571 kb on + strand at 469.710 kb on - strand, within GFF3036 at 469.721 kb on + strand, within GFF3036 at 469.743 kb on - strand, within GFF3036 at 469.743 kb on - strand, within GFF3036 at 469.743 kb on - strand, within GFF3036 at 469.895 kb on + strand, within GFF3036 at 469.896 kb on - strand, within GFF3036 at 470.351 kb on + strand, within GFF3037 at 470.351 kb on + strand, within GFF3037 at 470.351 kb on + strand, within GFF3037 at 470.352 kb on - strand, within GFF3037 at 470.812 kb on + strand, within GFF3038 at 470.848 kb on + strand, within GFF3038 at 470.950 kb on - strand, within GFF3038 at 470.950 kb on - strand, within GFF3038 at 470.950 kb on - strand, within GFF3038 at 470.988 kb on - strand, within GFF3038
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 468,614 + GFF3035 0.56 +0.5 468,632 + GFF3035 0.57 +0.1 468,847 + GFF3035 0.67 -0.6 468,848 - GFF3035 0.67 +0.1 468,848 - GFF3035 0.67 +0.2 468,851 + GFF3035 0.67 -0.1 468,920 + GFF3035 0.70 -0.5 468,929 + GFF3035 0.71 +1.5 468,929 + GFF3035 0.71 +0.1 468,930 - GFF3035 0.71 -0.2 468,930 - GFF3035 0.71 -0.7 468,930 - GFF3035 0.71 -0.8 469,016 + GFF3035 0.75 -0.3 469,095 - GFF3035 0.78 +1.0 469,139 + GFF3035 0.80 +0.3 469,139 + GFF3035 0.80 -0.4 469,241 + GFF3035 0.85 -0.2 469,242 - GFF3035 0.85 -0.1 469,242 - GFF3035 0.85 +1.0 469,299 - GFF3035 0.87 -0.8 469,346 + GFF3035 0.90 -0.3 469,347 - GFF3035 0.90 -0.1 469,425 - -0.1 469,517 + -0.8 469,517 + -0.8 469,571 + +0.1 469,710 - GFF3036 0.30 -0.5 469,721 + GFF3036 0.33 +0.1 469,743 - GFF3036 0.38 +1.5 469,743 - GFF3036 0.38 +1.8 469,743 - GFF3036 0.38 +1.0 469,895 + GFF3036 0.74 -0.8 469,896 - GFF3036 0.74 +0.8 470,351 + GFF3037 0.72 +0.1 470,351 + GFF3037 0.72 -0.1 470,351 + GFF3037 0.72 -0.8 470,352 - GFF3037 0.73 -1.2 470,812 + GFF3038 0.47 -1.1 470,848 + GFF3038 0.52 -1.2 470,950 - GFF3038 0.67 -1.3 470,950 - GFF3038 0.67 -0.8 470,950 - GFF3038 0.67 -0.6 470,988 - GFF3038 0.73 +0.0
Or see this region's nucleotide sequence