Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF300 and GFF301 overlap by 4 nucleotides GFF301 and GFF302 overlap by 1 nucleotides GFF302 and GFF303 are separated by 48 nucleotides GFF303 and GFF304 are separated by 117 nucleotides
GFF300 - Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), at 333,647 to 334,279
GFF300
GFF301 - Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3), at 334,276 to 335,193
GFF301
GFF302 - Phosphoribosylamine--glycine ligase (EC 6.3.4.13), at 335,193 to 336,494
GFF302
GFF303 - Probable transcriptional regulatory protein YebC, at 336,543 to 337,268
GFF303
GFF304 - Ubiquinone/menaquinone biosynthesis methyltransferase family protein, at 337,386 to 338,174
GFF304
Position (kb) 335
336
337 Strain fitness (log2 ratio) -2
-1
0
1
2 at 335.291 kb on - strand at 335.291 kb on - strand at 335.291 kb on - strand at 335.677 kb on + strand, within GFF302 at 335.677 kb on + strand, within GFF302 at 335.677 kb on + strand, within GFF302 at 335.791 kb on + strand, within GFF302 at 336.100 kb on + strand, within GFF302 at 336.101 kb on - strand, within GFF302 at 336.101 kb on - strand, within GFF302 at 336.101 kb on - strand, within GFF302 at 336.409 kb on + strand at 336.480 kb on + strand at 336.480 kb on + strand at 336.480 kb on + strand at 336.481 kb on - strand at 336.487 kb on - strand at 336.487 kb on - strand at 336.487 kb on - strand at 336.544 kb on + strand at 336.568 kb on + strand at 336.569 kb on - strand at 336.910 kb on + strand, within GFF303 at 336.911 kb on - strand, within GFF303 at 336.911 kb on - strand, within GFF303 at 336.911 kb on - strand, within GFF303 at 337.024 kb on + strand, within GFF303 at 337.024 kb on + strand, within GFF303 at 337.024 kb on + strand, within GFF303 at 337.025 kb on - strand, within GFF303 at 337.241 kb on + strand at 337.241 kb on + strand at 337.241 kb on + strand at 337.241 kb on + strand at 337.242 kb on - strand at 337.242 kb on - strand at 337.242 kb on - strand at 337.256 kb on + strand at 337.256 kb on + strand at 337.256 kb on + strand at 337.256 kb on + strand at 337.257 kb on - strand at 337.257 kb on - strand at 337.257 kb on - strand at 337.257 kb on - strand at 337.257 kb on - strand at 337.276 kb on + strand at 337.276 kb on + strand at 337.277 kb on - strand at 337.315 kb on + strand at 337.315 kb on + strand at 337.315 kb on + strand at 337.315 kb on + strand at 337.316 kb on - strand at 337.316 kb on - strand at 337.316 kb on - strand at 337.376 kb on + strand at 337.376 kb on + strand at 337.376 kb on + strand at 337.376 kb on + strand at 337.376 kb on + strand at 337.376 kb on + strand at 337.377 kb on - strand at 337.380 kb on - strand at 337.455 kb on + strand at 337.455 kb on + strand at 337.456 kb on - strand at 337.456 kb on - strand at 337.456 kb on - strand at 337.456 kb on - strand at 337.458 kb on + strand at 337.458 kb on + strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.459 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 335,291 - -1.1 335,291 - +1.6 335,291 - +0.2 335,677 + GFF302 0.37 -1.4 335,677 + GFF302 0.37 +1.0 335,677 + GFF302 0.37 -2.1 335,791 + GFF302 0.46 -1.5 336,100 + GFF302 0.70 +1.2 336,101 - GFF302 0.70 -1.1 336,101 - GFF302 0.70 -1.3 336,101 - GFF302 0.70 -0.3 336,409 + +1.2 336,480 + -1.1 336,480 + +0.3 336,480 + -2.3 336,481 - -0.8 336,487 - -1.7 336,487 - +0.1 336,487 - +0.7 336,544 + -0.3 336,568 + +0.2 336,569 - -1.1 336,910 + GFF303 0.51 -0.2 336,911 - GFF303 0.51 -0.4 336,911 - GFF303 0.51 -0.7 336,911 - GFF303 0.51 +1.2 337,024 + GFF303 0.66 -1.7 337,024 + GFF303 0.66 -0.1 337,024 + GFF303 0.66 -0.4 337,025 - GFF303 0.66 -0.7 337,241 + -1.0 337,241 + -0.6 337,241 + -0.6 337,241 + -1.9 337,242 - -0.9 337,242 - -2.1 337,242 - -0.0 337,256 + -1.4 337,256 + -2.4 337,256 + -0.3 337,256 + -1.3 337,257 - +0.2 337,257 - -0.7 337,257 - -0.0 337,257 - +1.2 337,257 - -0.8 337,276 + -0.1 337,276 + -0.1 337,277 - -0.3 337,315 + -0.2 337,315 + +0.3 337,315 + -0.4 337,315 + +1.8 337,316 - +0.5 337,316 - -0.4 337,316 - +0.3 337,376 + +1.2 337,376 + -0.0 337,376 + -1.0 337,376 + -0.9 337,376 + -1.3 337,376 + +1.2 337,377 - -0.2 337,380 - -0.1 337,455 + -2.6 337,455 + -0.8 337,456 - -0.2 337,456 - -0.1 337,456 - +0.4 337,456 - -1.1 337,458 + +1.2 337,458 + -0.4 337,459 - -0.4 337,459 - -0.3 337,459 - -0.7 337,459 - +0.4 337,459 - -2.3 337,459 - +0.2 337,459 - +0.2
Or see this region's nucleotide sequence