Strain Fitness in Variovorax sp. SCN45 around GFF3013

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3012 and GFF3013 are separated by 49 nucleotidesGFF3013 and GFF3014 are separated by 29 nucleotidesGFF3014 and GFF3015 are separated by 1 nucleotides GFF3012 - T6SS component TssC (ImpC/VipB), at 438,728 to 440,239 GFF3012 GFF3013 - KEGG: type VI secretion system secreted protein Hcp, at 440,289 to 440,771 GFF3013 GFF3014 - KEGG: type VI secretion system protein ImpF, at 440,801 to 441,259 GFF3014 GFF3015 - T6SS component TssF (ImpG/VasA), at 441,261 to 443,072 GFF3015 Position (kb) 440 441Strain fitness (log2 ratio) -2 -1 0 1 2at 439.463 kb on + strand, within GFF3012at 439.463 kb on + strand, within GFF3012at 439.463 kb on + strand, within GFF3012at 439.463 kb on + strand, within GFF3012at 439.487 kb on + strand, within GFF3012at 439.487 kb on + strand, within GFF3012at 439.488 kb on - strand, within GFF3012at 439.541 kb on + strand, within GFF3012at 439.541 kb on + strand, within GFF3012at 439.541 kb on + strand, within GFF3012at 439.542 kb on - strand, within GFF3012at 439.577 kb on + strand, within GFF3012at 439.577 kb on + strand, within GFF3012at 439.577 kb on + strand, within GFF3012at 439.577 kb on + strand, within GFF3012at 439.578 kb on - strand, within GFF3012at 439.578 kb on - strand, within GFF3012at 439.578 kb on - strand, within GFF3012at 439.637 kb on + strand, within GFF3012at 439.637 kb on + strand, within GFF3012at 439.637 kb on + strand, within GFF3012at 439.637 kb on + strand, within GFF3012at 439.637 kb on + strand, within GFF3012at 439.637 kb on + strand, within GFF3012at 439.637 kb on + strand, within GFF3012at 439.638 kb on - strand, within GFF3012at 439.638 kb on - strand, within GFF3012at 439.638 kb on - strand, within GFF3012at 439.706 kb on + strand, within GFF3012at 439.707 kb on - strand, within GFF3012at 439.707 kb on - strand, within GFF3012at 439.874 kb on + strand, within GFF3012at 439.874 kb on + strand, within GFF3012at 439.874 kb on + strand, within GFF3012at 439.874 kb on + strand, within GFF3012at 439.875 kb on - strand, within GFF3012at 439.875 kb on - strand, within GFF3012at 439.875 kb on - strand, within GFF3012at 439.925 kb on + strand, within GFF3012at 439.925 kb on + strand, within GFF3012at 439.925 kb on + strand, within GFF3012at 439.925 kb on + strand, within GFF3012at 439.925 kb on + strand, within GFF3012at 439.926 kb on - strand, within GFF3012at 439.926 kb on - strand, within GFF3012at 439.926 kb on - strand, within GFF3012at 439.926 kb on - strand, within GFF3012at 439.926 kb on - strand, within GFF3012at 439.955 kb on + strand, within GFF3012at 439.956 kb on - strand, within GFF3012at 440.042 kb on + strand, within GFF3012at 440.042 kb on + strand, within GFF3012at 440.042 kb on + strand, within GFF3012at 440.042 kb on + strand, within GFF3012at 440.042 kb on + strand, within GFF3012at 440.042 kb on + strand, within GFF3012at 440.042 kb on + strand, within GFF3012at 440.042 kb on + strand, within GFF3012at 440.042 kb on + strand, within GFF3012at 440.042 kb on + strand, within GFF3012at 440.043 kb on - strand, within GFF3012at 440.043 kb on - strand, within GFF3012at 440.043 kb on - strand, within GFF3012at 440.043 kb on - strand, within GFF3012at 440.043 kb on - strand, within GFF3012at 440.043 kb on - strand, within GFF3012at 440.088 kb on - strandat 440.241 kb on - strandat 440.259 kb on + strandat 440.259 kb on + strandat 440.294 kb on + strandat 440.294 kb on + strandat 440.294 kb on + strandat 440.294 kb on + strandat 440.294 kb on + strandat 440.294 kb on + strandat 440.294 kb on + strandat 440.294 kb on + strandat 440.294 kb on + strandat 440.294 kb on + strandat 440.295 kb on - strandat 440.295 kb on - strandat 440.295 kb on - strandat 440.295 kb on - strandat 440.295 kb on - strandat 440.298 kb on + strandat 440.298 kb on + strandat 440.299 kb on - strandat 440.299 kb on - strandat 440.299 kb on - strandat 440.667 kb on + strand, within GFF3013at 440.667 kb on + strand, within GFF3013at 440.667 kb on + strand, within GFF3013at 440.668 kb on - strand, within GFF3013at 440.668 kb on - strand, within GFF3013at 440.668 kb on - strand, within GFF3013at 440.688 kb on + strand, within GFF3013at 440.688 kb on + strand, within GFF3013at 440.689 kb on - strand, within GFF3013at 440.689 kb on - strand, within GFF3013at 440.972 kb on + strand, within GFF3014at 441.002 kb on + strand, within GFF3014at 441.002 kb on + strand, within GFF3014at 441.003 kb on - strand, within GFF3014at 441.093 kb on - strand, within GFF3014at 441.294 kb on + strandat 441.294 kb on + strandat 441.295 kb on - strandat 441.295 kb on - strandat 441.295 kb on - strandat 441.297 kb on + strandat 441.297 kb on + strandat 441.298 kb on - strandat 441.298 kb on - strandat 441.315 kb on + strandat 441.408 kb on - strandat 441.755 kb on - strand, within GFF3015at 441.755 kb on - strand, within GFF3015

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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439,463 + GFF3012 0.49 -0.1
439,463 + GFF3012 0.49 -0.5
439,463 + GFF3012 0.49 +0.5
439,463 + GFF3012 0.49 -0.4
439,487 + GFF3012 0.50 -0.4
439,487 + GFF3012 0.50 -0.7
439,488 - GFF3012 0.50 -0.0
439,541 + GFF3012 0.54 -0.4
439,541 + GFF3012 0.54 -0.9
439,541 + GFF3012 0.54 +1.5
439,542 - GFF3012 0.54 -0.3
439,577 + GFF3012 0.56 +1.4
439,577 + GFF3012 0.56 -0.0
439,577 + GFF3012 0.56 +1.0
439,577 + GFF3012 0.56 -0.1
439,578 - GFF3012 0.56 -0.7
439,578 - GFF3012 0.56 -0.8
439,578 - GFF3012 0.56 -0.7
439,637 + GFF3012 0.60 -0.4
439,637 + GFF3012 0.60 -0.8
439,637 + GFF3012 0.60 -0.2
439,637 + GFF3012 0.60 -0.0
439,637 + GFF3012 0.60 -0.7
439,637 + GFF3012 0.60 -0.4
439,637 + GFF3012 0.60 -1.9
439,638 - GFF3012 0.60 -1.8
439,638 - GFF3012 0.60 +1.1
439,638 - GFF3012 0.60 -0.2
439,706 + GFF3012 0.65 -0.1
439,707 - GFF3012 0.65 -0.4
439,707 - GFF3012 0.65 -0.7
439,874 + GFF3012 0.76 +0.2
439,874 + GFF3012 0.76 +0.2
439,874 + GFF3012 0.76 -1.5
439,874 + GFF3012 0.76 -0.8
439,875 - GFF3012 0.76 +0.1
439,875 - GFF3012 0.76 -0.3
439,875 - GFF3012 0.76 -1.9
439,925 + GFF3012 0.79 -0.2
439,925 + GFF3012 0.79 +0.5
439,925 + GFF3012 0.79 +0.7
439,925 + GFF3012 0.79 -0.3
439,925 + GFF3012 0.79 +0.2
439,926 - GFF3012 0.79 -0.9
439,926 - GFF3012 0.79 -0.3
439,926 - GFF3012 0.79 +0.0
439,926 - GFF3012 0.79 -0.9
439,926 - GFF3012 0.79 -0.5
439,955 + GFF3012 0.81 -0.6
439,956 - GFF3012 0.81 -0.2
440,042 + GFF3012 0.87 -0.8
440,042 + GFF3012 0.87 +1.3
440,042 + GFF3012 0.87 +0.9
440,042 + GFF3012 0.87 -0.0
440,042 + GFF3012 0.87 +1.0
440,042 + GFF3012 0.87 -0.1
440,042 + GFF3012 0.87 +0.4
440,042 + GFF3012 0.87 -0.1
440,042 + GFF3012 0.87 +0.2
440,042 + GFF3012 0.87 +0.0
440,043 - GFF3012 0.87 +0.5
440,043 - GFF3012 0.87 -0.6
440,043 - GFF3012 0.87 -0.0
440,043 - GFF3012 0.87 -0.2
440,043 - GFF3012 0.87 -0.9
440,043 - GFF3012 0.87 -0.3
440,088 - -0.9
440,241 - +0.1
440,259 + -0.9
440,259 + -0.5
440,294 + -0.2
440,294 + +0.7
440,294 + -2.4
440,294 + -1.0
440,294 + -0.3
440,294 + -0.0
440,294 + +0.6
440,294 + -1.0
440,294 + +0.1
440,294 + -1.0
440,295 - -0.2
440,295 - -0.2
440,295 - -0.1
440,295 - +0.1
440,295 - -0.2
440,298 + +0.0
440,298 + +0.7
440,299 - -0.3
440,299 - -0.6
440,299 - +0.2
440,667 + GFF3013 0.78 -0.0
440,667 + GFF3013 0.78 +1.1
440,667 + GFF3013 0.78 +1.7
440,668 - GFF3013 0.78 +0.2
440,668 - GFF3013 0.78 -0.1
440,668 - GFF3013 0.78 +1.9
440,688 + GFF3013 0.83 -0.5
440,688 + GFF3013 0.83 +0.7
440,689 - GFF3013 0.83 +0.2
440,689 - GFF3013 0.83 -0.5
440,972 + GFF3014 0.37 -0.7
441,002 + GFF3014 0.44 -0.8
441,002 + GFF3014 0.44 -0.3
441,003 - GFF3014 0.44 +0.5
441,093 - GFF3014 0.64 -1.0
441,294 + +0.8
441,294 + +0.7
441,295 - -0.2
441,295 - +0.2
441,295 - -1.8
441,297 + -1.5
441,297 + -0.4
441,298 - +0.5
441,298 - -1.0
441,315 + -1.1
441,408 - -1.3
441,755 - GFF3015 0.27 -0.5
441,755 - GFF3015 0.27 -0.3

Or see this region's nucleotide sequence