Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2989 and GFF2990 are separated by 50 nucleotides GFF2990 and GFF2991 are separated by 18 nucleotides GFF2991 and GFF2992 are separated by 211 nucleotides
GFF2989 - hypothetical protein, at 419,648 to 421,054
GFF2989
GFF2990 - Probable hydrolase protein (EC 3.-.-.-), at 421,105 to 421,926
GFF2990
GFF2991 - BUG/TctC family periplasmic protein, at 421,945 to 422,904
GFF2991
GFF2992 - BUG/TctC family periplasmic protein, at 423,116 to 424,105
GFF2992
Position (kb) 421
422
423 Strain fitness (log2 ratio) -2
-1
0
1
2 at 421.138 kb on + strand at 421.138 kb on + strand at 421.138 kb on + strand at 421.138 kb on + strand at 421.138 kb on + strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.139 kb on - strand at 421.144 kb on + strand at 421.144 kb on + strand at 421.144 kb on + strand at 421.145 kb on - strand at 421.145 kb on - strand at 421.145 kb on - strand at 421.145 kb on - strand at 421.145 kb on - strand at 421.145 kb on - strand at 421.613 kb on - strand, within GFF2990 at 421.702 kb on + strand, within GFF2990 at 421.703 kb on - strand, within GFF2990 at 421.703 kb on - strand, within GFF2990 at 422.591 kb on + strand, within GFF2991 at 422.591 kb on + strand, within GFF2991 at 422.684 kb on + strand, within GFF2991 at 422.684 kb on + strand, within GFF2991 at 422.684 kb on + strand, within GFF2991 at 422.684 kb on + strand, within GFF2991 at 422.684 kb on + strand, within GFF2991 at 422.685 kb on - strand, within GFF2991 at 422.685 kb on - strand, within GFF2991 at 422.685 kb on - strand, within GFF2991 at 423.072 kb on + strand at 423.072 kb on + strand at 423.072 kb on + strand at 423.073 kb on - strand at 423.073 kb on - strand at 423.117 kb on + strand at 423.117 kb on + strand at 423.117 kb on + strand at 423.128 kb on - strand at 423.333 kb on + strand, within GFF2992 at 423.334 kb on - strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.537 kb on + strand, within GFF2992 at 423.538 kb on - strand, within GFF2992 at 423.538 kb on - strand, within GFF2992 at 423.538 kb on - strand, within GFF2992 at 423.538 kb on - strand, within GFF2992 at 423.544 kb on + strand, within GFF2992 at 423.544 kb on + strand, within GFF2992 at 423.544 kb on + strand, within GFF2992 at 423.544 kb on + strand, within GFF2992 at 423.544 kb on + strand, within GFF2992 at 423.625 kb on - strand, within GFF2992 at 423.625 kb on - strand, within GFF2992 at 423.798 kb on + strand, within GFF2992 at 423.798 kb on + strand, within GFF2992 at 423.799 kb on - strand, within GFF2992 at 423.799 kb on - strand, within GFF2992 at 423.799 kb on - strand, within GFF2992 at 423.799 kb on - strand, within GFF2992
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 421,138 + +0.8 421,138 + -0.3 421,138 + -0.3 421,138 + -0.1 421,138 + -0.2 421,139 - +0.4 421,139 - +0.1 421,139 - +1.5 421,139 - +0.3 421,139 - -0.9 421,139 - -0.4 421,139 - -0.1 421,139 - -0.5 421,139 - -0.4 421,139 - -1.3 421,139 - +0.7 421,139 - -0.4 421,139 - +1.2 421,139 - -0.3 421,139 - -0.6 421,139 - -1.1 421,139 - +0.3 421,144 + -0.1 421,144 + -0.5 421,144 + +0.1 421,145 - +0.4 421,145 - -0.7 421,145 - -0.2 421,145 - -0.0 421,145 - +0.0 421,145 - -0.6 421,613 - GFF2990 0.62 +0.1 421,702 + GFF2990 0.73 -0.1 421,703 - GFF2990 0.73 -0.9 421,703 - GFF2990 0.73 +0.1 422,591 + GFF2991 0.67 +0.1 422,591 + GFF2991 0.67 +0.8 422,684 + GFF2991 0.77 +1.7 422,684 + GFF2991 0.77 -0.5 422,684 + GFF2991 0.77 +0.1 422,684 + GFF2991 0.77 +0.6 422,684 + GFF2991 0.77 +0.3 422,685 - GFF2991 0.77 -0.2 422,685 - GFF2991 0.77 -0.1 422,685 - GFF2991 0.77 +1.5 423,072 + +0.3 423,072 + -1.0 423,072 + -0.5 423,073 - -0.4 423,073 - +0.5 423,117 + -1.3 423,117 + -0.5 423,117 + +1.8 423,128 - +0.5 423,333 + GFF2992 0.22 -1.6 423,334 - GFF2992 0.22 +0.0 423,537 + GFF2992 0.43 -1.0 423,537 + GFF2992 0.43 -1.9 423,537 + GFF2992 0.43 +1.1 423,537 + GFF2992 0.43 -0.1 423,537 + GFF2992 0.43 -0.1 423,537 + GFF2992 0.43 -0.5 423,537 + GFF2992 0.43 -0.7 423,537 + GFF2992 0.43 +1.4 423,538 - GFF2992 0.43 -1.8 423,538 - GFF2992 0.43 +0.3 423,538 - GFF2992 0.43 +0.1 423,538 - GFF2992 0.43 -1.0 423,544 + GFF2992 0.43 -0.0 423,544 + GFF2992 0.43 -0.4 423,544 + GFF2992 0.43 -0.8 423,544 + GFF2992 0.43 +1.2 423,544 + GFF2992 0.43 -0.3 423,625 - GFF2992 0.51 -1.5 423,625 - GFF2992 0.51 -0.4 423,798 + GFF2992 0.69 -0.0 423,798 + GFF2992 0.69 +0.4 423,799 - GFF2992 0.69 +0.1 423,799 - GFF2992 0.69 +0.3 423,799 - GFF2992 0.69 +0.5 423,799 - GFF2992 0.69 -0.0
Or see this region's nucleotide sequence