Strain Fitness in Variovorax sp. SCN45 around GFF2963

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2962 and GFF2963 overlap by 4 nucleotidesGFF2963 and GFF2964 are separated by 22 nucleotides GFF2962 - RND efflux system, membrane fusion protein, at 392,353 to 393,600 GFF2962 GFF2963 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 393,597 to 395,081 GFF2963 GFF2964 - L-carnitine dehydratase/bile acid-inducible protein F, at 395,104 to 396,366 GFF2964 Position (kb) 393 394 395 396Strain fitness (log2 ratio) -2 -1 0 1 2 3at 392.677 kb on + strand, within GFF2962at 392.677 kb on + strand, within GFF2962at 392.678 kb on - strand, within GFF2962at 392.678 kb on - strand, within GFF2962at 393.109 kb on + strand, within GFF2962at 393.109 kb on + strand, within GFF2962at 393.109 kb on + strand, within GFF2962at 393.110 kb on - strand, within GFF2962at 393.110 kb on - strand, within GFF2962at 393.110 kb on - strand, within GFF2962at 393.110 kb on - strand, within GFF2962at 393.130 kb on + strand, within GFF2962at 393.130 kb on + strand, within GFF2962at 393.131 kb on - strand, within GFF2962at 393.131 kb on - strand, within GFF2962at 393.131 kb on - strand, within GFF2962at 393.131 kb on - strand, within GFF2962at 393.304 kb on + strand, within GFF2962at 393.304 kb on + strand, within GFF2962at 393.304 kb on + strand, within GFF2962at 393.304 kb on + strand, within GFF2962at 393.304 kb on + strand, within GFF2962at 393.304 kb on + strand, within GFF2962at 393.304 kb on + strand, within GFF2962at 393.304 kb on + strand, within GFF2962at 393.304 kb on + strand, within GFF2962at 393.304 kb on + strand, within GFF2962at 393.304 kb on + strand, within GFF2962at 393.304 kb on + strand, within GFF2962at 393.305 kb on - strand, within GFF2962at 393.305 kb on - strand, within GFF2962at 393.305 kb on - strand, within GFF2962at 393.305 kb on - strand, within GFF2962at 393.305 kb on - strand, within GFF2962at 393.305 kb on - strand, within GFF2962at 393.305 kb on - strand, within GFF2962at 393.305 kb on - strand, within GFF2962at 393.305 kb on - strand, within GFF2962at 393.305 kb on - strand, within GFF2962at 393.451 kb on + strand, within GFF2962at 393.451 kb on + strand, within GFF2962at 393.452 kb on - strand, within GFF2962at 393.452 kb on - strand, within GFF2962at 393.452 kb on - strand, within GFF2962at 393.452 kb on - strand, within GFF2962at 393.452 kb on - strand, within GFF2962at 393.452 kb on - strand, within GFF2962at 393.675 kb on + strandat 393.676 kb on - strandat 393.676 kb on - strandat 393.972 kb on + strand, within GFF2963at 393.972 kb on + strand, within GFF2963at 393.973 kb on - strand, within GFF2963at 394.032 kb on + strand, within GFF2963at 394.032 kb on + strand, within GFF2963at 394.032 kb on + strand, within GFF2963at 394.033 kb on - strand, within GFF2963at 394.155 kb on + strand, within GFF2963at 394.155 kb on + strand, within GFF2963at 394.156 kb on - strand, within GFF2963at 394.462 kb on + strand, within GFF2963at 394.462 kb on + strand, within GFF2963at 394.463 kb on - strand, within GFF2963at 394.463 kb on - strand, within GFF2963at 394.548 kb on + strand, within GFF2963at 394.549 kb on - strand, within GFF2963at 394.711 kb on - strand, within GFF2963at 394.731 kb on + strand, within GFF2963at 394.731 kb on + strand, within GFF2963at 394.731 kb on + strand, within GFF2963at 394.732 kb on - strand, within GFF2963at 394.732 kb on - strand, within GFF2963at 394.869 kb on + strand, within GFF2963at 394.890 kb on + strand, within GFF2963at 394.890 kb on + strand, within GFF2963at 394.890 kb on + strand, within GFF2963at 394.890 kb on + strand, within GFF2963at 394.890 kb on + strand, within GFF2963at 394.890 kb on + strand, within GFF2963at 394.891 kb on - strand, within GFF2963at 394.891 kb on - strand, within GFF2963at 394.891 kb on - strand, within GFF2963at 395.105 kb on + strandat 395.227 kb on - strandat 395.399 kb on + strand, within GFF2964at 395.400 kb on - strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.675 kb on + strand, within GFF2964at 395.676 kb on - strand, within GFF2964at 395.849 kb on + strand, within GFF2964at 395.850 kb on - strand, within GFF2964at 395.951 kb on + strand, within GFF2964

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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392,677 + GFF2962 0.26 -1.5
392,677 + GFF2962 0.26 -0.8
392,678 - GFF2962 0.26 +0.5
392,678 - GFF2962 0.26 -0.2
393,109 + GFF2962 0.61 +3.1
393,109 + GFF2962 0.61 -0.0
393,109 + GFF2962 0.61 -0.5
393,110 - GFF2962 0.61 -0.2
393,110 - GFF2962 0.61 -1.4
393,110 - GFF2962 0.61 +0.2
393,110 - GFF2962 0.61 -0.6
393,130 + GFF2962 0.62 +0.4
393,130 + GFF2962 0.62 -0.6
393,131 - GFF2962 0.62 -0.0
393,131 - GFF2962 0.62 -0.3
393,131 - GFF2962 0.62 +0.8
393,131 - GFF2962 0.62 -2.3
393,304 + GFF2962 0.76 -0.4
393,304 + GFF2962 0.76 -0.2
393,304 + GFF2962 0.76 +0.5
393,304 + GFF2962 0.76 -0.5
393,304 + GFF2962 0.76 +0.1
393,304 + GFF2962 0.76 -0.4
393,304 + GFF2962 0.76 -0.3
393,304 + GFF2962 0.76 +2.0
393,304 + GFF2962 0.76 +1.2
393,304 + GFF2962 0.76 -0.3
393,304 + GFF2962 0.76 -0.7
393,304 + GFF2962 0.76 -0.8
393,305 - GFF2962 0.76 +1.0
393,305 - GFF2962 0.76 -0.1
393,305 - GFF2962 0.76 -0.2
393,305 - GFF2962 0.76 -0.6
393,305 - GFF2962 0.76 -0.0
393,305 - GFF2962 0.76 -0.1
393,305 - GFF2962 0.76 -0.3
393,305 - GFF2962 0.76 +0.3
393,305 - GFF2962 0.76 +0.1
393,305 - GFF2962 0.76 -0.0
393,451 + GFF2962 0.88 +1.5
393,451 + GFF2962 0.88 +0.5
393,452 - GFF2962 0.88 +1.0
393,452 - GFF2962 0.88 -0.3
393,452 - GFF2962 0.88 -0.9
393,452 - GFF2962 0.88 -0.3
393,452 - GFF2962 0.88 +0.3
393,452 - GFF2962 0.88 +0.9
393,675 + -1.6
393,676 - -0.4
393,676 - -0.9
393,972 + GFF2963 0.25 -1.3
393,972 + GFF2963 0.25 -0.6
393,973 - GFF2963 0.25 -0.6
394,032 + GFF2963 0.29 -0.8
394,032 + GFF2963 0.29 +0.6
394,032 + GFF2963 0.29 +2.0
394,033 - GFF2963 0.29 +0.3
394,155 + GFF2963 0.38 -0.2
394,155 + GFF2963 0.38 -0.9
394,156 - GFF2963 0.38 +0.4
394,462 + GFF2963 0.58 +0.0
394,462 + GFF2963 0.58 +0.5
394,463 - GFF2963 0.58 +0.5
394,463 - GFF2963 0.58 -0.3
394,548 + GFF2963 0.64 +0.3
394,549 - GFF2963 0.64 +0.5
394,711 - GFF2963 0.75 -0.1
394,731 + GFF2963 0.76 -0.9
394,731 + GFF2963 0.76 +0.1
394,731 + GFF2963 0.76 +0.1
394,732 - GFF2963 0.76 -1.9
394,732 - GFF2963 0.76 -0.1
394,869 + GFF2963 0.86 -0.5
394,890 + GFF2963 0.87 +0.5
394,890 + GFF2963 0.87 -0.2
394,890 + GFF2963 0.87 -0.5
394,890 + GFF2963 0.87 +0.3
394,890 + GFF2963 0.87 +0.8
394,890 + GFF2963 0.87 +0.1
394,891 - GFF2963 0.87 -0.5
394,891 - GFF2963 0.87 -0.2
394,891 - GFF2963 0.87 -0.8
395,105 + +0.3
395,227 - -0.1
395,399 + GFF2964 0.23 -0.1
395,400 - GFF2964 0.23 +0.3
395,420 + GFF2964 0.25 -0.9
395,420 + GFF2964 0.25 -1.8
395,420 + GFF2964 0.25 -0.4
395,420 + GFF2964 0.25 -0.1
395,420 + GFF2964 0.25 -0.7
395,420 + GFF2964 0.25 -1.0
395,420 + GFF2964 0.25 +1.5
395,420 + GFF2964 0.25 -0.9
395,421 - GFF2964 0.25 -0.7
395,421 - GFF2964 0.25 -0.5
395,421 - GFF2964 0.25 -0.7
395,421 - GFF2964 0.25 -0.2
395,421 - GFF2964 0.25 -0.6
395,421 - GFF2964 0.25 -0.7
395,421 - GFF2964 0.25 +0.1
395,421 - GFF2964 0.25 -0.2
395,421 - GFF2964 0.25 +0.1
395,421 - GFF2964 0.25 -0.5
395,675 + GFF2964 0.45 +1.5
395,676 - GFF2964 0.45 -1.0
395,849 + GFF2964 0.59 +0.2
395,850 - GFF2964 0.59 +1.1
395,951 + GFF2964 0.67 +0.1

Or see this region's nucleotide sequence