Strain Fitness in Variovorax sp. SCN45 around GFF2926

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2925 and GFF2926 are separated by 179 nucleotidesGFF2926 and GFF2927 are separated by 85 nucleotidesGFF2927 and GFF2928 are separated by 187 nucleotides GFF2925 - Phosphatidylserine decarboxylase (EC 4.1.1.65), at 352,228 to 353,079 GFF2925 GFF2926 - FIG00349048: hypothetical protein, at 353,259 to 353,702 GFF2926 GFF2927 - Peptidylprolyl isomerase, FKBP-type (EC 5.2.1.8), at 353,788 to 354,138 GFF2927 GFF2928 - Heat shock protein GrpE, at 354,326 to 354,862 GFF2928 Position (kb) 353 354Strain fitness (log2 ratio) -3 -2 -1 0 1at 353.065 kb on + strandat 353.066 kb on - strandat 353.066 kb on - strandat 353.066 kb on - strandat 353.116 kb on + strandat 353.116 kb on + strandat 353.117 kb on - strandat 353.120 kb on + strandat 353.152 kb on + strandat 353.153 kb on - strandat 353.154 kb on + strandat 353.154 kb on + strandat 353.154 kb on + strandat 353.155 kb on - strandat 353.155 kb on - strandat 353.155 kb on - strandat 353.180 kb on + strandat 353.181 kb on - strandat 353.264 kb on + strandat 353.264 kb on + strandat 353.264 kb on + strandat 353.264 kb on + strandat 353.264 kb on + strandat 353.265 kb on - strandat 353.265 kb on - strandat 353.265 kb on - strandat 353.265 kb on - strandat 353.265 kb on - strandat 353.265 kb on - strandat 353.265 kb on - strandat 353.316 kb on + strand, within GFF2926at 353.317 kb on - strand, within GFF2926at 353.317 kb on - strand, within GFF2926at 353.317 kb on - strand, within GFF2926at 353.469 kb on + strand, within GFF2926at 353.469 kb on + strand, within GFF2926at 353.469 kb on + strand, within GFF2926at 353.469 kb on + strand, within GFF2926at 353.470 kb on - strand, within GFF2926at 353.470 kb on - strand, within GFF2926at 353.470 kb on - strand, within GFF2926at 353.470 kb on - strand, within GFF2926at 353.470 kb on - strand, within GFF2926at 353.470 kb on - strand, within GFF2926at 353.734 kb on + strandat 353.734 kb on + strandat 353.735 kb on - strandat 353.735 kb on - strandat 353.815 kb on + strandat 353.815 kb on + strandat 353.815 kb on + strandat 353.815 kb on + strandat 353.815 kb on + strandat 353.815 kb on + strandat 353.816 kb on - strandat 353.816 kb on - strandat 353.816 kb on - strandat 353.816 kb on - strandat 353.816 kb on - strandat 353.816 kb on - strandat 353.816 kb on - strandat 353.816 kb on - strandat 353.816 kb on - strandat 353.816 kb on - strandat 353.878 kb on + strand, within GFF2927at 353.878 kb on + strand, within GFF2927at 353.878 kb on + strand, within GFF2927at 353.878 kb on + strand, within GFF2927at 353.878 kb on + strand, within GFF2927at 353.878 kb on + strand, within GFF2927at 353.878 kb on + strand, within GFF2927at 353.878 kb on + strand, within GFF2927at 353.878 kb on + strand, within GFF2927at 353.878 kb on + strand, within GFF2927at 353.879 kb on - strand, within GFF2927at 353.879 kb on - strand, within GFF2927at 353.879 kb on - strand, within GFF2927at 353.893 kb on + strand, within GFF2927at 353.893 kb on + strand, within GFF2927at 353.893 kb on + strand, within GFF2927at 353.893 kb on + strand, within GFF2927at 353.893 kb on + strand, within GFF2927at 353.893 kb on + strand, within GFF2927at 353.893 kb on + strand, within GFF2927at 353.893 kb on + strand, within GFF2927at 353.893 kb on + strand, within GFF2927at 353.894 kb on - strand, within GFF2927at 353.894 kb on - strand, within GFF2927at 353.894 kb on - strand, within GFF2927at 353.894 kb on - strand, within GFF2927at 353.894 kb on - strand, within GFF2927at 353.894 kb on - strand, within GFF2927at 353.894 kb on - strand, within GFF2927at 354.058 kb on + strand, within GFF2927at 354.058 kb on + strand, within GFF2927at 354.058 kb on + strand, within GFF2927at 354.058 kb on + strand, within GFF2927at 354.058 kb on + strand, within GFF2927at 354.058 kb on + strand, within GFF2927at 354.058 kb on + strand, within GFF2927at 354.059 kb on - strand, within GFF2927at 354.059 kb on - strand, within GFF2927at 354.059 kb on - strand, within GFF2927at 354.252 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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353,065 + +0.1
353,066 - -0.5
353,066 - -0.3
353,066 - +0.4
353,116 + +0.3
353,116 + +0.1
353,117 - -0.7
353,120 + +0.2
353,152 + +0.8
353,153 - -1.1
353,154 + +0.1
353,154 + -0.6
353,154 + -0.6
353,155 - -0.0
353,155 - +0.1
353,155 - +0.3
353,180 + -0.0
353,181 - -0.6
353,264 + -0.3
353,264 + -1.3
353,264 + -0.8
353,264 + -0.8
353,264 + -0.1
353,265 - +0.3
353,265 - -1.3
353,265 - -0.3
353,265 - +0.3
353,265 - -0.3
353,265 - +1.0
353,265 - -0.1
353,316 + GFF2926 0.13 -0.5
353,317 - GFF2926 0.13 -1.5
353,317 - GFF2926 0.13 -0.4
353,317 - GFF2926 0.13 -0.5
353,469 + GFF2926 0.47 -1.2
353,469 + GFF2926 0.47 -0.1
353,469 + GFF2926 0.47 -0.8
353,469 + GFF2926 0.47 -1.4
353,470 - GFF2926 0.48 -0.8
353,470 - GFF2926 0.48 -0.6
353,470 - GFF2926 0.48 -1.0
353,470 - GFF2926 0.48 -0.5
353,470 - GFF2926 0.48 -0.3
353,470 - GFF2926 0.48 -0.5
353,734 + +0.0
353,734 + -0.3
353,735 - -3.1
353,735 - -0.8
353,815 + -0.7
353,815 + +0.1
353,815 + -0.5
353,815 + -0.1
353,815 + -0.9
353,815 + +1.2
353,816 - -0.6
353,816 - -0.1
353,816 - -0.2
353,816 - +0.8
353,816 - -1.1
353,816 - -1.6
353,816 - +1.2
353,816 - -1.1
353,816 - +0.8
353,816 - -0.1
353,878 + GFF2927 0.26 -0.7
353,878 + GFF2927 0.26 -1.6
353,878 + GFF2927 0.26 -0.2
353,878 + GFF2927 0.26 -1.1
353,878 + GFF2927 0.26 +0.3
353,878 + GFF2927 0.26 -0.6
353,878 + GFF2927 0.26 -1.0
353,878 + GFF2927 0.26 +0.1
353,878 + GFF2927 0.26 +1.1
353,878 + GFF2927 0.26 -0.5
353,879 - GFF2927 0.26 -1.6
353,879 - GFF2927 0.26 -1.0
353,879 - GFF2927 0.26 +0.4
353,893 + GFF2927 0.30 -1.6
353,893 + GFF2927 0.30 +0.8
353,893 + GFF2927 0.30 -0.5
353,893 + GFF2927 0.30 +0.5
353,893 + GFF2927 0.30 +0.1
353,893 + GFF2927 0.30 +0.1
353,893 + GFF2927 0.30 -0.4
353,893 + GFF2927 0.30 +1.1
353,893 + GFF2927 0.30 -0.4
353,894 - GFF2927 0.30 -1.2
353,894 - GFF2927 0.30 +0.1
353,894 - GFF2927 0.30 -0.1
353,894 - GFF2927 0.30 +1.5
353,894 - GFF2927 0.30 -0.5
353,894 - GFF2927 0.30 -0.2
353,894 - GFF2927 0.30 -0.8
354,058 + GFF2927 0.77 -1.2
354,058 + GFF2927 0.77 +0.1
354,058 + GFF2927 0.77 -1.1
354,058 + GFF2927 0.77 +0.2
354,058 + GFF2927 0.77 -0.6
354,058 + GFF2927 0.77 -0.8
354,058 + GFF2927 0.77 -0.5
354,059 - GFF2927 0.77 -1.4
354,059 - GFF2927 0.77 -0.1
354,059 - GFF2927 0.77 +0.3
354,252 + +0.1

Or see this region's nucleotide sequence