Strain Fitness in Variovorax sp. SCN45 around GFF2921

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2920 and GFF2921 are separated by 18 nucleotidesGFF2921 and GFF2922 are separated by 22 nucleotidesGFF2922 and GFF2923 are separated by 50 nucleotides GFF2920 - TRAP-type C4-dicarboxylate transport system, large permease component, at 346,351 to 347,703 GFF2920 GFF2921 - D-galactarate dehydratase (EC 4.2.1.42), at 347,722 to 349,302 GFF2921 GFF2922 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 349,325 to 350,086 GFF2922 GFF2923 - Tripartite tricarboxylate transporter TctC family, at 350,137 to 351,117 GFF2923 Position (kb) 347 348 349 350Strain fitness (log2 ratio) -2 -1 0 1 2at 346.738 kb on + strand, within GFF2920at 346.739 kb on - strand, within GFF2920at 346.751 kb on - strand, within GFF2920at 346.822 kb on + strand, within GFF2920at 346.823 kb on - strand, within GFF2920at 347.150 kb on - strand, within GFF2920at 347.150 kb on - strand, within GFF2920at 347.290 kb on + strand, within GFF2920at 347.290 kb on + strand, within GFF2920at 347.290 kb on + strand, within GFF2920at 347.291 kb on - strand, within GFF2920at 347.362 kb on + strand, within GFF2920at 347.362 kb on + strand, within GFF2920at 347.362 kb on + strand, within GFF2920at 347.363 kb on - strand, within GFF2920at 347.363 kb on - strand, within GFF2920at 347.363 kb on - strand, within GFF2920at 347.363 kb on - strand, within GFF2920at 347.363 kb on - strand, within GFF2920at 347.363 kb on - strand, within GFF2920at 347.562 kb on - strand, within GFF2920at 347.570 kb on + strandat 347.571 kb on - strandat 347.605 kb on + strandat 347.608 kb on + strandat 347.608 kb on + strandat 347.609 kb on - strandat 347.609 kb on - strandat 347.644 kb on + strandat 347.644 kb on + strandat 347.644 kb on + strandat 347.645 kb on - strandat 347.645 kb on - strandat 347.701 kb on + strandat 347.701 kb on + strandat 347.702 kb on - strandat 347.755 kb on + strandat 347.755 kb on + strandat 347.755 kb on + strandat 347.917 kb on + strand, within GFF2921at 347.918 kb on - strand, within GFF2921at 347.918 kb on - strand, within GFF2921at 348.064 kb on + strand, within GFF2921at 348.064 kb on + strand, within GFF2921at 348.064 kb on + strand, within GFF2921at 348.065 kb on - strand, within GFF2921at 348.065 kb on - strand, within GFF2921at 348.065 kb on - strand, within GFF2921at 348.242 kb on - strand, within GFF2921at 348.785 kb on - strand, within GFF2921at 348.793 kb on + strand, within GFF2921at 348.793 kb on + strand, within GFF2921at 348.793 kb on + strand, within GFF2921at 348.794 kb on - strand, within GFF2921at 348.794 kb on - strand, within GFF2921at 348.794 kb on - strand, within GFF2921at 348.965 kb on - strand, within GFF2921at 349.184 kb on + strandat 349.184 kb on + strandat 349.184 kb on + strandat 349.184 kb on + strandat 349.184 kb on + strandat 349.185 kb on - strandat 349.185 kb on - strandat 349.433 kb on + strand, within GFF2922at 349.433 kb on + strand, within GFF2922at 349.433 kb on + strand, within GFF2922at 349.434 kb on - strand, within GFF2922at 349.790 kb on + strand, within GFF2922at 349.796 kb on + strand, within GFF2922at 349.796 kb on + strand, within GFF2922at 349.797 kb on - strand, within GFF2922at 349.797 kb on - strand, within GFF2922at 349.797 kb on - strand, within GFF2922at 350.009 kb on + strand, within GFF2922at 350.009 kb on + strand, within GFF2922at 350.009 kb on + strand, within GFF2922at 350.009 kb on + strand, within GFF2922at 350.010 kb on - strandat 350.010 kb on - strandat 350.010 kb on - strandat 350.010 kb on - strandat 350.010 kb on - strandat 350.036 kb on + strandat 350.037 kb on - strandat 350.037 kb on - strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.236 kb on + strand, within GFF2923

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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346,738 + GFF2920 0.29 -1.0
346,739 - GFF2920 0.29 -0.5
346,751 - GFF2920 0.30 -0.9
346,822 + GFF2920 0.35 -0.5
346,823 - GFF2920 0.35 +0.5
347,150 - GFF2920 0.59 -0.3
347,150 - GFF2920 0.59 +1.0
347,290 + GFF2920 0.69 -0.6
347,290 + GFF2920 0.69 -0.6
347,290 + GFF2920 0.69 -0.5
347,291 - GFF2920 0.69 -1.0
347,362 + GFF2920 0.75 -1.5
347,362 + GFF2920 0.75 -1.2
347,362 + GFF2920 0.75 +0.0
347,363 - GFF2920 0.75 -0.5
347,363 - GFF2920 0.75 -0.0
347,363 - GFF2920 0.75 -1.6
347,363 - GFF2920 0.75 +0.5
347,363 - GFF2920 0.75 +0.3
347,363 - GFF2920 0.75 -0.0
347,562 - GFF2920 0.90 -0.9
347,570 + -0.1
347,571 - +0.1
347,605 + -0.0
347,608 + +0.6
347,608 + +0.4
347,609 - -0.5
347,609 - +0.7
347,644 + -0.0
347,644 + +0.0
347,644 + -0.1
347,645 - +0.2
347,645 - -0.7
347,701 + -0.4
347,701 + -0.8
347,702 - +0.5
347,755 + +0.0
347,755 + -0.9
347,755 + +0.2
347,917 + GFF2921 0.12 -0.6
347,918 - GFF2921 0.12 -1.8
347,918 - GFF2921 0.12 -0.0
348,064 + GFF2921 0.22 -1.0
348,064 + GFF2921 0.22 -1.0
348,064 + GFF2921 0.22 -0.3
348,065 - GFF2921 0.22 -0.8
348,065 - GFF2921 0.22 -0.9
348,065 - GFF2921 0.22 -0.9
348,242 - GFF2921 0.33 -0.5
348,785 - GFF2921 0.67 -0.2
348,793 + GFF2921 0.68 -0.0
348,793 + GFF2921 0.68 -1.0
348,793 + GFF2921 0.68 -0.7
348,794 - GFF2921 0.68 +1.1
348,794 - GFF2921 0.68 -1.0
348,794 - GFF2921 0.68 -1.5
348,965 - GFF2921 0.79 -0.8
349,184 + -1.1
349,184 + -0.4
349,184 + +0.6
349,184 + -0.7
349,184 + +1.8
349,185 - -1.0
349,185 - -0.0
349,433 + GFF2922 0.14 +0.1
349,433 + GFF2922 0.14 -0.4
349,433 + GFF2922 0.14 +0.2
349,434 - GFF2922 0.14 -0.0
349,790 + GFF2922 0.61 +0.2
349,796 + GFF2922 0.62 -0.1
349,796 + GFF2922 0.62 +1.1
349,797 - GFF2922 0.62 -0.3
349,797 - GFF2922 0.62 -0.2
349,797 - GFF2922 0.62 -2.0
350,009 + GFF2922 0.90 -0.4
350,009 + GFF2922 0.90 -0.9
350,009 + GFF2922 0.90 -0.3
350,009 + GFF2922 0.90 -1.1
350,010 - +0.9
350,010 - -0.3
350,010 - -0.8
350,010 - -0.3
350,010 - +0.3
350,036 + -0.2
350,037 - -0.4
350,037 - -1.1
350,075 + +0.2
350,075 + -0.5
350,075 + +0.2
350,075 + -1.8
350,075 + -0.7
350,075 + -0.2
350,075 + +0.3
350,075 + +0.0
350,075 + -0.1
350,075 + -0.0
350,075 + -0.4
350,075 + -0.2
350,075 + +0.7
350,075 + -0.1
350,075 + +1.5
350,076 - -0.0
350,076 - -1.0
350,076 - -1.6
350,076 - +0.3
350,076 - -1.0
350,076 - +0.2
350,076 - -0.0
350,076 - -0.4
350,076 - +0.4
350,076 - -1.5
350,236 + GFF2923 0.10 -0.5

Or see this region's nucleotide sequence