Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2783 and GFF2784 are separated by 140 nucleotides GFF2784 and GFF2785 are separated by 87 nucleotides GFF2785 and GFF2786 are separated by 85 nucleotides
GFF2783 - Transcriptional regulator, LysR family, at 212,975 to 213,862
GFF2783
GFF2784 - Peptidase, M20/M25/M40 family, at 214,003 to 215,358
GFF2784
GFF2785 - hypothetical protein, at 215,446 to 215,898
GFF2785
GFF2786 - Sulfate transporter family protein, at 215,984 to 217,711
GFF2786
Position (kb) 214
215
216 Strain fitness (log2 ratio) -2
-1
0
1
2 at 213.057 kb on + strand at 213.057 kb on + strand at 213.057 kb on + strand at 213.057 kb on + strand at 213.057 kb on + strand at 213.058 kb on - strand at 213.058 kb on - strand at 213.132 kb on + strand, within GFF2783 at 213.132 kb on + strand, within GFF2783 at 213.132 kb on + strand, within GFF2783 at 213.132 kb on + strand, within GFF2783 at 213.133 kb on - strand, within GFF2783 at 213.133 kb on - strand, within GFF2783 at 213.133 kb on - strand, within GFF2783 at 213.133 kb on - strand, within GFF2783 at 213.421 kb on - strand, within GFF2783 at 213.456 kb on + strand, within GFF2783 at 213.456 kb on + strand, within GFF2783 at 213.456 kb on + strand, within GFF2783 at 213.456 kb on + strand, within GFF2783 at 213.456 kb on + strand, within GFF2783 at 213.456 kb on + strand, within GFF2783 at 213.456 kb on + strand, within GFF2783 at 213.456 kb on + strand, within GFF2783 at 213.456 kb on + strand, within GFF2783 at 213.456 kb on + strand, within GFF2783 at 213.457 kb on - strand, within GFF2783 at 213.457 kb on - strand, within GFF2783 at 213.457 kb on - strand, within GFF2783 at 213.457 kb on - strand, within GFF2783 at 213.457 kb on - strand, within GFF2783 at 213.899 kb on + strand at 213.899 kb on + strand at 213.899 kb on + strand at 213.899 kb on + strand at 213.900 kb on - strand at 213.917 kb on + strand at 214.115 kb on + strand at 214.116 kb on - strand at 214.116 kb on - strand at 214.116 kb on - strand at 214.138 kb on + strand at 214.138 kb on + strand at 214.138 kb on + strand at 214.139 kb on - strand, within GFF2784 at 214.139 kb on - strand, within GFF2784 at 214.139 kb on - strand, within GFF2784 at 214.139 kb on - strand, within GFF2784 at 214.457 kb on - strand, within GFF2784 at 214.497 kb on - strand, within GFF2784 at 214.866 kb on + strand, within GFF2784 at 214.866 kb on + strand, within GFF2784 at 214.866 kb on + strand, within GFF2784 at 215.400 kb on + strand at 215.400 kb on + strand at 215.400 kb on + strand at 215.400 kb on + strand at 215.428 kb on + strand at 215.674 kb on + strand, within GFF2785 at 215.675 kb on - strand, within GFF2785 at 215.692 kb on + strand, within GFF2785 at 215.692 kb on + strand, within GFF2785 at 215.692 kb on + strand, within GFF2785 at 215.692 kb on + strand, within GFF2785 at 215.692 kb on + strand, within GFF2785 at 215.692 kb on + strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.866 kb on + strand at 215.866 kb on + strand at 215.866 kb on + strand at 215.866 kb on + strand at 215.866 kb on + strand at 215.866 kb on + strand at 215.867 kb on - strand at 215.867 kb on - strand at 215.867 kb on - strand at 215.867 kb on - strand at 215.867 kb on - strand at 215.896 kb on + strand at 215.896 kb on + strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.927 kb on + strand at 215.927 kb on + strand at 215.927 kb on + strand at 215.927 kb on + strand at 215.927 kb on + strand at 215.928 kb on - strand at 215.928 kb on - strand at 216.137 kb on + strand at 216.137 kb on + strand at 216.137 kb on + strand at 216.137 kb on + strand at 216.138 kb on - strand at 216.138 kb on - strand at 216.138 kb on - strand at 216.176 kb on + strand, within GFF2786 at 216.177 kb on - strand, within GFF2786
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 213,057 + -0.2 213,057 + -0.0 213,057 + +0.9 213,057 + +0.5 213,057 + -0.8 213,058 - +0.4 213,058 - -0.6 213,132 + GFF2783 0.18 -0.7 213,132 + GFF2783 0.18 -0.5 213,132 + GFF2783 0.18 +0.3 213,132 + GFF2783 0.18 -1.1 213,133 - GFF2783 0.18 +0.2 213,133 - GFF2783 0.18 -1.1 213,133 - GFF2783 0.18 -0.2 213,133 - GFF2783 0.18 -0.2 213,421 - GFF2783 0.50 +0.1 213,456 + GFF2783 0.54 -0.0 213,456 + GFF2783 0.54 +0.4 213,456 + GFF2783 0.54 -0.8 213,456 + GFF2783 0.54 -0.1 213,456 + GFF2783 0.54 +0.2 213,456 + GFF2783 0.54 -0.4 213,456 + GFF2783 0.54 +0.1 213,456 + GFF2783 0.54 +0.5 213,456 + GFF2783 0.54 +0.3 213,456 + GFF2783 0.54 -0.8 213,457 - GFF2783 0.54 +0.3 213,457 - GFF2783 0.54 -0.8 213,457 - GFF2783 0.54 -0.1 213,457 - GFF2783 0.54 -0.1 213,457 - GFF2783 0.54 -0.3 213,899 + +0.3 213,899 + -0.7 213,899 + -0.2 213,899 + +0.9 213,900 - -0.9 213,917 + +0.5 214,115 + -0.9 214,116 - +0.1 214,116 - -0.4 214,116 - -0.5 214,138 + -0.4 214,138 + -0.1 214,138 + +0.0 214,139 - GFF2784 0.10 +0.1 214,139 - GFF2784 0.10 +0.0 214,139 - GFF2784 0.10 -0.4 214,139 - GFF2784 0.10 +0.1 214,457 - GFF2784 0.33 +0.4 214,497 - GFF2784 0.36 +0.9 214,866 + GFF2784 0.64 -0.5 214,866 + GFF2784 0.64 +1.0 214,866 + GFF2784 0.64 +1.1 215,400 + -0.3 215,400 + -0.3 215,400 + +1.5 215,400 + +0.5 215,428 + +0.4 215,674 + GFF2785 0.50 -0.8 215,675 - GFF2785 0.51 -0.4 215,692 + GFF2785 0.54 -0.1 215,692 + GFF2785 0.54 -1.2 215,692 + GFF2785 0.54 +0.1 215,692 + GFF2785 0.54 -0.2 215,692 + GFF2785 0.54 -1.1 215,692 + GFF2785 0.54 -0.1 215,693 - GFF2785 0.55 +0.2 215,693 - GFF2785 0.55 -0.9 215,693 - GFF2785 0.55 -1.4 215,693 - GFF2785 0.55 -0.8 215,693 - GFF2785 0.55 -0.4 215,693 - GFF2785 0.55 -0.1 215,693 - GFF2785 0.55 -0.5 215,693 - GFF2785 0.55 -0.3 215,866 + -0.5 215,866 + -0.1 215,866 + -0.0 215,866 + -0.2 215,866 + -0.5 215,866 + +0.7 215,867 - +0.9 215,867 - -0.1 215,867 - -1.0 215,867 - -0.8 215,867 - -1.6 215,896 + -1.1 215,896 + +0.3 215,897 - +1.8 215,897 - -0.2 215,897 - -0.2 215,897 - -1.8 215,897 - +0.2 215,897 - -0.6 215,897 - +0.2 215,897 - +0.2 215,897 - -0.5 215,897 - +0.8 215,927 + -0.7 215,927 + -0.3 215,927 + +0.4 215,927 + -0.7 215,927 + -0.2 215,928 - -0.3 215,928 - -0.8 216,137 + -0.8 216,137 + -0.1 216,137 + -1.7 216,137 + -1.0 216,138 - +1.7 216,138 - +1.5 216,138 - +0.6 216,176 + GFF2786 0.11 +0.7 216,177 - GFF2786 0.11 +0.5
Or see this region's nucleotide sequence