Strain Fitness in Variovorax sp. SCN45 around GFF2779

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2778 and GFF2779 are separated by 89 nucleotidesGFF2779 and GFF2780 are separated by 58 nucleotidesGFF2780 and GFF2781 are separated by 97 nucleotides GFF2778 - Fosmidomycin resistance protein, at 208,425 to 209,678 GFF2778 GFF2779 - Transcriptional regulator, AraC family, at 209,768 to 210,640 GFF2779 GFF2780 - Phosphoesterase, PA-phosphatase related, at 210,699 to 211,433 GFF2780 GFF2781 - Phosphopantetheine-binding, at 211,531 to 211,773 GFF2781 Position (kb) 209 210 211Strain fitness (log2 ratio) -2 -1 0 1 2 3at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.865 kb on - strand, within GFF2778at 208.865 kb on - strand, within GFF2778at 208.865 kb on - strand, within GFF2778at 208.865 kb on - strand, within GFF2778at 208.865 kb on - strand, within GFF2778at 208.865 kb on - strand, within GFF2778at 208.963 kb on + strand, within GFF2778at 208.963 kb on + strand, within GFF2778at 208.964 kb on - strand, within GFF2778at 208.964 kb on - strand, within GFF2778at 208.964 kb on - strand, within GFF2778at 208.964 kb on - strand, within GFF2778at 209.098 kb on + strand, within GFF2778at 209.099 kb on - strand, within GFF2778at 209.099 kb on - strand, within GFF2778at 209.167 kb on + strand, within GFF2778at 209.167 kb on + strand, within GFF2778at 209.168 kb on - strand, within GFF2778at 209.168 kb on - strand, within GFF2778at 209.168 kb on - strand, within GFF2778at 209.242 kb on + strand, within GFF2778at 209.242 kb on + strand, within GFF2778at 209.242 kb on + strand, within GFF2778at 209.242 kb on + strand, within GFF2778at 209.242 kb on + strand, within GFF2778at 209.243 kb on - strand, within GFF2778at 209.243 kb on - strand, within GFF2778at 209.243 kb on - strand, within GFF2778at 209.243 kb on - strand, within GFF2778at 209.243 kb on - strand, within GFF2778at 209.243 kb on - strand, within GFF2778at 209.290 kb on + strand, within GFF2778at 209.291 kb on - strand, within GFF2778at 209.291 kb on - strand, within GFF2778at 209.291 kb on - strand, within GFF2778at 209.356 kb on + strand, within GFF2778at 209.356 kb on + strand, within GFF2778at 209.356 kb on + strand, within GFF2778at 209.357 kb on - strand, within GFF2778at 209.357 kb on - strand, within GFF2778at 209.357 kb on - strand, within GFF2778at 209.357 kb on - strand, within GFF2778at 209.357 kb on - strand, within GFF2778at 209.357 kb on - strand, within GFF2778at 209.518 kb on + strand, within GFF2778at 209.518 kb on + strand, within GFF2778at 209.518 kb on + strand, within GFF2778at 209.518 kb on + strand, within GFF2778at 209.518 kb on + strand, within GFF2778at 209.519 kb on - strand, within GFF2778at 209.519 kb on - strand, within GFF2778at 209.519 kb on - strand, within GFF2778at 209.519 kb on - strand, within GFF2778at 209.519 kb on - strand, within GFF2778at 209.519 kb on - strand, within GFF2778at 209.687 kb on - strandat 209.714 kb on + strandat 209.714 kb on + strandat 209.714 kb on + strandat 209.714 kb on + strandat 209.714 kb on + strandat 209.714 kb on + strandat 209.714 kb on + strandat 209.715 kb on - strandat 209.715 kb on - strandat 209.715 kb on - strandat 209.715 kb on - strandat 209.715 kb on - strandat 209.864 kb on + strand, within GFF2779at 209.864 kb on + strand, within GFF2779at 209.864 kb on + strand, within GFF2779at 209.865 kb on - strand, within GFF2779at 209.865 kb on - strand, within GFF2779at 209.865 kb on - strand, within GFF2779at 209.865 kb on - strand, within GFF2779at 209.865 kb on - strand, within GFF2779at 209.865 kb on - strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.008 kb on + strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.009 kb on - strand, within GFF2779at 210.098 kb on + strand, within GFF2779at 210.098 kb on + strand, within GFF2779at 210.098 kb on + strand, within GFF2779at 210.098 kb on + strand, within GFF2779at 210.099 kb on - strand, within GFF2779at 210.099 kb on - strand, within GFF2779at 210.099 kb on - strand, within GFF2779at 210.099 kb on - strand, within GFF2779at 210.099 kb on - strand, within GFF2779at 210.545 kb on + strand, within GFF2779at 210.545 kb on + strand, within GFF2779at 210.546 kb on - strand, within GFF2779at 210.546 kb on - strand, within GFF2779at 210.841 kb on - strand, within GFF2780at 210.925 kb on - strand, within GFF2780at 210.939 kb on + strand, within GFF2780at 210.940 kb on - strand, within GFF2780at 210.940 kb on - strand, within GFF2780at 210.940 kb on - strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 211.008 kb on + strand, within GFF2780at 211.009 kb on - strand, within GFF2780at 211.009 kb on - strand, within GFF2780at 211.009 kb on - strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.275 kb on + strand, within GFF2780at 211.276 kb on - strand, within GFF2780at 211.276 kb on - strand, within GFF2780at 211.276 kb on - strand, within GFF2780at 211.362 kb on + strandat 211.362 kb on + strandat 211.363 kb on - strandat 211.363 kb on - strandat 211.363 kb on - strandat 211.363 kb on - strandat 211.415 kb on + strandat 211.416 kb on - strandat 211.573 kb on + strand, within GFF2781at 211.573 kb on + strand, within GFF2781at 211.574 kb on - strand, within GFF2781

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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208,864 + GFF2778 0.35 -0.3
208,864 + GFF2778 0.35 -0.0
208,864 + GFF2778 0.35 -0.1
208,864 + GFF2778 0.35 +0.8
208,864 + GFF2778 0.35 +0.5
208,864 + GFF2778 0.35 +0.2
208,864 + GFF2778 0.35 +0.5
208,864 + GFF2778 0.35 -0.9
208,864 + GFF2778 0.35 -0.1
208,864 + GFF2778 0.35 +0.2
208,864 + GFF2778 0.35 +0.8
208,865 - GFF2778 0.35 -0.0
208,865 - GFF2778 0.35 -1.4
208,865 - GFF2778 0.35 -0.4
208,865 - GFF2778 0.35 -0.7
208,865 - GFF2778 0.35 -0.8
208,865 - GFF2778 0.35 -0.6
208,963 + GFF2778 0.43 -0.3
208,963 + GFF2778 0.43 -0.3
208,964 - GFF2778 0.43 +0.6
208,964 - GFF2778 0.43 -1.7
208,964 - GFF2778 0.43 +0.3
208,964 - GFF2778 0.43 +0.4
209,098 + GFF2778 0.54 -0.7
209,099 - GFF2778 0.54 -0.3
209,099 - GFF2778 0.54 -0.0
209,167 + GFF2778 0.59 +0.1
209,167 + GFF2778 0.59 +0.4
209,168 - GFF2778 0.59 -0.6
209,168 - GFF2778 0.59 +2.9
209,168 - GFF2778 0.59 -0.8
209,242 + GFF2778 0.65 -0.8
209,242 + GFF2778 0.65 -0.3
209,242 + GFF2778 0.65 -0.3
209,242 + GFF2778 0.65 -1.4
209,242 + GFF2778 0.65 -0.1
209,243 - GFF2778 0.65 -0.3
209,243 - GFF2778 0.65 +0.5
209,243 - GFF2778 0.65 -0.6
209,243 - GFF2778 0.65 -0.3
209,243 - GFF2778 0.65 -0.2
209,243 - GFF2778 0.65 -0.2
209,290 + GFF2778 0.69 +1.5
209,291 - GFF2778 0.69 -1.3
209,291 - GFF2778 0.69 -0.1
209,291 - GFF2778 0.69 -0.2
209,356 + GFF2778 0.74 +0.0
209,356 + GFF2778 0.74 +0.0
209,356 + GFF2778 0.74 +0.2
209,357 - GFF2778 0.74 +0.4
209,357 - GFF2778 0.74 +0.7
209,357 - GFF2778 0.74 -0.3
209,357 - GFF2778 0.74 -0.5
209,357 - GFF2778 0.74 -0.9
209,357 - GFF2778 0.74 +0.7
209,518 + GFF2778 0.87 -0.0
209,518 + GFF2778 0.87 -0.7
209,518 + GFF2778 0.87 -0.2
209,518 + GFF2778 0.87 +0.8
209,518 + GFF2778 0.87 -0.1
209,519 - GFF2778 0.87 -0.3
209,519 - GFF2778 0.87 -0.2
209,519 - GFF2778 0.87 -0.4
209,519 - GFF2778 0.87 -0.1
209,519 - GFF2778 0.87 -0.1
209,519 - GFF2778 0.87 +0.2
209,687 - -0.6
209,714 + +1.2
209,714 + -0.1
209,714 + -0.3
209,714 + -1.2
209,714 + -1.2
209,714 + -0.2
209,714 + +0.4
209,715 - -1.0
209,715 - +0.1
209,715 - -0.5
209,715 - -0.3
209,715 - +0.1
209,864 + GFF2779 0.11 -0.8
209,864 + GFF2779 0.11 +0.0
209,864 + GFF2779 0.11 +0.1
209,865 - GFF2779 0.11 -0.2
209,865 - GFF2779 0.11 -0.1
209,865 - GFF2779 0.11 +0.3
209,865 - GFF2779 0.11 -0.1
209,865 - GFF2779 0.11 +0.5
209,865 - GFF2779 0.11 +0.9
210,008 + GFF2779 0.27 +1.5
210,008 + GFF2779 0.27 -0.1
210,008 + GFF2779 0.27 -0.4
210,008 + GFF2779 0.27 -1.8
210,008 + GFF2779 0.27 +0.2
210,008 + GFF2779 0.27 -0.5
210,008 + GFF2779 0.27 -0.1
210,008 + GFF2779 0.27 -0.2
210,008 + GFF2779 0.27 +0.2
210,008 + GFF2779 0.27 +0.6
210,008 + GFF2779 0.27 -0.2
210,008 + GFF2779 0.27 -0.2
210,008 + GFF2779 0.27 -0.3
210,008 + GFF2779 0.27 +0.3
210,008 + GFF2779 0.27 +0.4
210,009 - GFF2779 0.28 -0.1
210,009 - GFF2779 0.28 -0.5
210,009 - GFF2779 0.28 -0.3
210,009 - GFF2779 0.28 -0.1
210,009 - GFF2779 0.28 -0.1
210,009 - GFF2779 0.28 +0.4
210,009 - GFF2779 0.28 -1.7
210,009 - GFF2779 0.28 -0.6
210,009 - GFF2779 0.28 +0.2
210,009 - GFF2779 0.28 +1.2
210,009 - GFF2779 0.28 +0.2
210,098 + GFF2779 0.38 -1.1
210,098 + GFF2779 0.38 +0.1
210,098 + GFF2779 0.38 -0.0
210,098 + GFF2779 0.38 +0.3
210,099 - GFF2779 0.38 +0.2
210,099 - GFF2779 0.38 +0.0
210,099 - GFF2779 0.38 -0.6
210,099 - GFF2779 0.38 -2.3
210,099 - GFF2779 0.38 +0.1
210,545 + GFF2779 0.89 -1.0
210,545 + GFF2779 0.89 -0.4
210,546 - GFF2779 0.89 +1.5
210,546 - GFF2779 0.89 +0.0
210,841 - GFF2780 0.19 +0.3
210,925 - GFF2780 0.31 +0.5
210,939 + GFF2780 0.33 +0.2
210,940 - GFF2780 0.33 -0.0
210,940 - GFF2780 0.33 +1.3
210,940 - GFF2780 0.33 -0.1
210,957 + GFF2780 0.35 +0.5
210,957 + GFF2780 0.35 +0.1
210,957 + GFF2780 0.35 +0.5
210,957 + GFF2780 0.35 +0.0
210,957 + GFF2780 0.35 +0.3
210,957 + GFF2780 0.35 -0.8
210,957 + GFF2780 0.35 -0.9
210,957 + GFF2780 0.35 -0.5
210,957 + GFF2780 0.35 +0.3
210,957 + GFF2780 0.35 +0.1
210,957 + GFF2780 0.35 -0.1
210,957 + GFF2780 0.35 -1.0
210,957 + GFF2780 0.35 +1.3
210,957 + GFF2780 0.35 +0.5
210,957 + GFF2780 0.35 +1.1
210,958 - GFF2780 0.35 +1.2
210,958 - GFF2780 0.35 +0.2
210,958 - GFF2780 0.35 -0.1
210,958 - GFF2780 0.35 -1.8
210,958 - GFF2780 0.35 +0.3
210,958 - GFF2780 0.35 +1.1
210,958 - GFF2780 0.35 +0.8
210,958 - GFF2780 0.35 +0.2
210,958 - GFF2780 0.35 +0.1
210,958 - GFF2780 0.35 +2.1
211,008 + GFF2780 0.42 -1.1
211,009 - GFF2780 0.42 -0.3
211,009 - GFF2780 0.42 -1.3
211,009 - GFF2780 0.42 +1.1
211,056 + GFF2780 0.49 +0.1
211,056 + GFF2780 0.49 -0.5
211,056 + GFF2780 0.49 +1.2
211,056 + GFF2780 0.49 -0.3
211,056 + GFF2780 0.49 +0.4
211,056 + GFF2780 0.49 -0.3
211,056 + GFF2780 0.49 -0.3
211,057 - GFF2780 0.49 +0.6
211,057 - GFF2780 0.49 +1.1
211,057 - GFF2780 0.49 -1.7
211,057 - GFF2780 0.49 -0.8
211,057 - GFF2780 0.49 -0.5
211,057 - GFF2780 0.49 -1.3
211,275 + GFF2780 0.78 +0.3
211,276 - GFF2780 0.79 -0.0
211,276 - GFF2780 0.79 -0.4
211,276 - GFF2780 0.79 +0.8
211,362 + -1.5
211,362 + -2.6
211,363 - +1.1
211,363 - -0.1
211,363 - -0.7
211,363 - -2.4
211,415 + -0.2
211,416 - +0.5
211,573 + GFF2781 0.17 +0.3
211,573 + GFF2781 0.17 -1.1
211,574 - GFF2781 0.18 +0.5

Or see this region's nucleotide sequence