Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2732 and GFF2733 are separated by 19 nucleotides GFF2733 and GFF2734 are separated by 30 nucleotides GFF2734 and GFF2735 are separated by 60 nucleotides
GFF2732 - Soluble lytic murein transglycosylase (EC 4.2.2.n1), at 167,579 to 168,481
GFF2732
GFF2733 - no description, at 168,501 to 168,959
GFF2733
GFF2734 - DNA topoisomerase IV subunit B (EC 5.99.1.3), at 168,990 to 170,987
GFF2734
GFF2735 - Transcriptional regulator, LysR family, at 171,048 to 171,935
GFF2735
Position (kb) 168
169
170
171 Strain fitness (log2 ratio) -2
-1
0
1
2 at 168.147 kb on + strand, within GFF2732 at 168.147 kb on + strand, within GFF2732 at 168.147 kb on + strand, within GFF2732 at 168.147 kb on + strand, within GFF2732 at 168.148 kb on - strand, within GFF2732 at 168.201 kb on + strand, within GFF2732 at 168.201 kb on + strand, within GFF2732 at 168.202 kb on - strand, within GFF2732 at 168.202 kb on - strand, within GFF2732 at 168.343 kb on - strand, within GFF2732 at 168.396 kb on + strand at 168.396 kb on + strand at 168.396 kb on + strand at 168.397 kb on - strand at 168.397 kb on - strand at 168.402 kb on + strand at 168.402 kb on + strand at 168.402 kb on + strand at 168.402 kb on + strand at 168.402 kb on + strand at 168.402 kb on + strand at 168.402 kb on + strand at 168.402 kb on + strand at 168.403 kb on - strand at 168.403 kb on - strand at 168.403 kb on - strand at 168.403 kb on - strand at 168.403 kb on - strand at 168.403 kb on - strand at 168.403 kb on - strand at 168.403 kb on - strand at 168.403 kb on - strand at 168.403 kb on - strand at 168.474 kb on + strand at 168.474 kb on + strand at 168.475 kb on - strand at 168.475 kb on - strand at 168.475 kb on - strand at 168.502 kb on + strand at 168.502 kb on + strand at 168.503 kb on - strand at 168.517 kb on + strand at 168.518 kb on - strand at 168.976 kb on + strand at 168.977 kb on - strand at 169.235 kb on + strand, within GFF2734 at 169.235 kb on + strand, within GFF2734 at 169.236 kb on - strand, within GFF2734 at 169.236 kb on - strand, within GFF2734 at 169.282 kb on + strand, within GFF2734 at 169.282 kb on + strand, within GFF2734 at 169.351 kb on + strand, within GFF2734 at 169.351 kb on + strand, within GFF2734 at 169.351 kb on + strand, within GFF2734 at 169.351 kb on + strand, within GFF2734 at 169.351 kb on + strand, within GFF2734 at 169.351 kb on + strand, within GFF2734 at 169.351 kb on + strand, within GFF2734 at 169.351 kb on + strand, within GFF2734 at 169.352 kb on - strand, within GFF2734 at 169.352 kb on - strand, within GFF2734 at 169.352 kb on - strand, within GFF2734 at 169.352 kb on - strand, within GFF2734 at 169.352 kb on - strand, within GFF2734 at 169.352 kb on - strand, within GFF2734 at 169.352 kb on - strand, within GFF2734 at 169.352 kb on - strand, within GFF2734 at 169.969 kb on + strand, within GFF2734 at 169.969 kb on + strand, within GFF2734 at 169.969 kb on + strand, within GFF2734 at 169.970 kb on - strand, within GFF2734 at 170.122 kb on + strand, within GFF2734 at 170.122 kb on + strand, within GFF2734 at 170.122 kb on + strand, within GFF2734 at 170.122 kb on + strand, within GFF2734 at 170.122 kb on + strand, within GFF2734 at 170.122 kb on + strand, within GFF2734 at 170.122 kb on + strand, within GFF2734 at 170.122 kb on + strand, within GFF2734 at 170.122 kb on + strand, within GFF2734 at 170.123 kb on - strand, within GFF2734 at 170.272 kb on + strand, within GFF2734 at 170.272 kb on + strand, within GFF2734 at 170.273 kb on - strand, within GFF2734 at 170.273 kb on - strand, within GFF2734 at 170.293 kb on + strand, within GFF2734 at 170.294 kb on - strand, within GFF2734 at 170.294 kb on - strand, within GFF2734 at 170.294 kb on - strand, within GFF2734 at 170.419 kb on + strand, within GFF2734 at 170.419 kb on + strand, within GFF2734 at 170.626 kb on + strand, within GFF2734 at 170.677 kb on + strand, within GFF2734 at 170.677 kb on + strand, within GFF2734 at 170.677 kb on + strand, within GFF2734 at 170.678 kb on - strand, within GFF2734 at 170.678 kb on - strand, within GFF2734 at 170.872 kb on + strand at 170.872 kb on + strand at 170.872 kb on + strand at 170.872 kb on + strand at 170.872 kb on + strand at 170.873 kb on - strand at 170.873 kb on - strand at 170.873 kb on - strand at 170.873 kb on - strand at 170.873 kb on - strand at 170.873 kb on - strand at 170.873 kb on - strand at 170.873 kb on - strand at 170.873 kb on - strand at 171.000 kb on + strand at 171.000 kb on + strand at 171.001 kb on - strand at 171.001 kb on - strand at 171.001 kb on - strand at 171.001 kb on - strand at 171.001 kb on - strand at 171.001 kb on - strand at 171.018 kb on + strand at 171.019 kb on - strand at 171.019 kb on - strand at 171.019 kb on - strand at 171.033 kb on - strand at 171.033 kb on - strand at 171.049 kb on + strand at 171.049 kb on + strand at 171.049 kb on + strand at 171.049 kb on + strand at 171.049 kb on + strand at 171.050 kb on - strand at 171.050 kb on - strand at 171.050 kb on - strand at 171.361 kb on + strand, within GFF2735 at 171.367 kb on + strand, within GFF2735 at 171.430 kb on + strand, within GFF2735 at 171.430 kb on + strand, within GFF2735 at 171.430 kb on + strand, within GFF2735 at 171.431 kb on - strand, within GFF2735 at 171.431 kb on - strand, within GFF2735 at 171.431 kb on - strand, within GFF2735 at 171.589 kb on + strand, within GFF2735 at 171.589 kb on + strand, within GFF2735 at 171.590 kb on - strand, within GFF2735 at 171.590 kb on - strand, within GFF2735
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 168,147 + GFF2732 0.63 -0.5 168,147 + GFF2732 0.63 -0.5 168,147 + GFF2732 0.63 +1.1 168,147 + GFF2732 0.63 +1.1 168,148 - GFF2732 0.63 -0.4 168,201 + GFF2732 0.69 +0.5 168,201 + GFF2732 0.69 -0.8 168,202 - GFF2732 0.69 +1.5 168,202 - GFF2732 0.69 +0.5 168,343 - GFF2732 0.85 -0.7 168,396 + -1.3 168,396 + +0.5 168,396 + -0.1 168,397 - -0.4 168,397 - -0.1 168,402 + -0.5 168,402 + -0.5 168,402 + -0.5 168,402 + -0.0 168,402 + +1.7 168,402 + -0.0 168,402 + +0.0 168,402 + -1.3 168,403 - -0.5 168,403 - -0.8 168,403 - -1.5 168,403 - -0.2 168,403 - -0.3 168,403 - -0.5 168,403 - +0.2 168,403 - +0.3 168,403 - -0.3 168,403 - -0.7 168,474 + -0.1 168,474 + -0.8 168,475 - +1.5 168,475 - +0.2 168,475 - -0.1 168,502 + +0.2 168,502 + +1.2 168,503 - +0.3 168,517 + +0.5 168,518 - -1.4 168,976 + +1.2 168,977 - -1.8 169,235 + GFF2734 0.12 +0.5 169,235 + GFF2734 0.12 -0.1 169,236 - GFF2734 0.12 -1.1 169,236 - GFF2734 0.12 +1.5 169,282 + GFF2734 0.15 +1.5 169,282 + GFF2734 0.15 -0.1 169,351 + GFF2734 0.18 -0.5 169,351 + GFF2734 0.18 -0.1 169,351 + GFF2734 0.18 +0.5 169,351 + GFF2734 0.18 +1.5 169,351 + GFF2734 0.18 +0.5 169,351 + GFF2734 0.18 -0.1 169,351 + GFF2734 0.18 +1.5 169,351 + GFF2734 0.18 +1.5 169,352 - GFF2734 0.18 +1.5 169,352 - GFF2734 0.18 -0.5 169,352 - GFF2734 0.18 +1.5 169,352 - GFF2734 0.18 +0.5 169,352 - GFF2734 0.18 +1.5 169,352 - GFF2734 0.18 +1.5 169,352 - GFF2734 0.18 -1.5 169,352 - GFF2734 0.18 -1.7 169,969 + GFF2734 0.49 +0.5 169,969 + GFF2734 0.49 -0.8 169,969 + GFF2734 0.49 +1.5 169,970 - GFF2734 0.49 +1.5 170,122 + GFF2734 0.57 -0.5 170,122 + GFF2734 0.57 -0.1 170,122 + GFF2734 0.57 +0.5 170,122 + GFF2734 0.57 +0.5 170,122 + GFF2734 0.57 +1.5 170,122 + GFF2734 0.57 +1.5 170,122 + GFF2734 0.57 +0.5 170,122 + GFF2734 0.57 +0.5 170,122 + GFF2734 0.57 +0.5 170,123 - GFF2734 0.57 +0.5 170,272 + GFF2734 0.64 +0.9 170,272 + GFF2734 0.64 -0.5 170,273 - GFF2734 0.64 +1.5 170,273 - GFF2734 0.64 +1.5 170,293 + GFF2734 0.65 +0.5 170,294 - GFF2734 0.65 -0.1 170,294 - GFF2734 0.65 +0.5 170,294 - GFF2734 0.65 +0.9 170,419 + GFF2734 0.72 -0.1 170,419 + GFF2734 0.72 -1.1 170,626 + GFF2734 0.82 +0.5 170,677 + GFF2734 0.84 +1.5 170,677 + GFF2734 0.84 +1.5 170,677 + GFF2734 0.84 +0.5 170,678 - GFF2734 0.84 +1.5 170,678 - GFF2734 0.84 +0.5 170,872 + +1.5 170,872 + +1.5 170,872 + +1.5 170,872 + +1.5 170,872 + +1.5 170,873 - +0.5 170,873 - +1.5 170,873 - -0.5 170,873 - +1.5 170,873 - +1.5 170,873 - +1.5 170,873 - +1.5 170,873 - +0.5 170,873 - +2.5 171,000 + +0.9 171,000 + +1.1 171,001 - -0.1 171,001 - -0.8 171,001 - -0.1 171,001 - -0.2 171,001 - +1.5 171,001 - -1.7 171,018 + -0.5 171,019 - +1.4 171,019 - +0.7 171,019 - +0.3 171,033 - -0.1 171,033 - +0.2 171,049 + -0.5 171,049 + +2.5 171,049 + -1.0 171,049 + -0.3 171,049 + -0.3 171,050 - -0.3 171,050 - -0.1 171,050 - -0.1 171,361 + GFF2735 0.35 -0.7 171,367 + GFF2735 0.36 -0.8 171,430 + GFF2735 0.43 -0.2 171,430 + GFF2735 0.43 -0.4 171,430 + GFF2735 0.43 -1.2 171,431 - GFF2735 0.43 +0.2 171,431 - GFF2735 0.43 +1.2 171,431 - GFF2735 0.43 -0.0 171,589 + GFF2735 0.61 -0.2 171,589 + GFF2735 0.61 +0.1 171,590 - GFF2735 0.61 +0.1 171,590 - GFF2735 0.61 +0.3
Or see this region's nucleotide sequence