Strain Fitness in Variovorax sp. SCN45 around GFF2688

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
117,073	+		GFF2687	0.74	+0.2
117,073	+		GFF2687	0.74	+0.9
117,074	-		GFF2687	0.74	-0.4
117,591	+				-1.0
117,591	+				+0.3
117,591	+				-1.3
117,592	-				-0.0
117,657	+				-0.7
117,657	+				-1.5
117,657	+				-0.1
117,657	+				-0.2
117,657	+				+1.2
117,658	-				-1.2
117,702	+				+0.7
117,703	-				-1.1
117,732	+				+0.3
117,733	-				-2.2
118,289	+		GFF2688	0.47	+0.1
118,290	-		GFF2688	0.47	-0.5
118,530	-		GFF2688	0.76	+1.8
118,679	+				+0.2
118,679	+				+2.5
118,691	+				+0.4
118,692	-				-0.3
118,795	+				-1.1
118,927	+		GFF2689	0.18	+0.5
119,131	+		GFF2689	0.39	-0.9
119,131	+		GFF2689	0.39	+0.0
119,231	-		GFF2689	0.49	-0.3
119,272	-		GFF2689	0.54	-0.0
119,371	+		GFF2689	0.64	-0.7
119,536	+		GFF2689	0.81	-0.5
119,537	-		GFF2689	0.81	+0.4
119,537	-		GFF2689	0.81	+0.9
119,537	-		GFF2689	0.81	+1.0
119,564	-		GFF2689	0.84	+0.2
119,591	+		GFF2689	0.87	+1.5
119,592	-		GFF2689	0.87	-0.1