Strain Fitness in Variovorax sp. SCN45 around GFF2680

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2679 and GFF2680 are separated by 30 nucleotidesGFF2680 and GFF2681 are separated by 278 nucleotides GFF2679 - Glycerol kinase (EC 2.7.1.30), at 101,400 to 102,896 GFF2679 GFF2680 - Protein of unknown function DUF1058, at 102,927 to 103,388 GFF2680 GFF2681 - Phosphoethanolamine transferase EptC [E.coli], specific for LPS heptose I residue, at 103,667 to 105,241 GFF2681 Position (kb) 102 103 104Strain fitness (log2 ratio) -2 -1 0 1at 102.186 kb on + strand, within GFF2679at 102.186 kb on + strand, within GFF2679at 102.187 kb on - strand, within GFF2679at 102.187 kb on - strand, within GFF2679at 102.187 kb on - strand, within GFF2679at 102.187 kb on - strand, within GFF2679at 102.292 kb on - strand, within GFF2679at 102.292 kb on - strand, within GFF2679at 102.292 kb on - strand, within GFF2679at 102.296 kb on + strand, within GFF2679at 102.297 kb on - strand, within GFF2679at 102.456 kb on + strand, within GFF2679at 102.549 kb on + strand, within GFF2679at 102.550 kb on - strand, within GFF2679at 102.550 kb on - strand, within GFF2679at 102.550 kb on - strand, within GFF2679at 102.738 kb on + strand, within GFF2679at 102.739 kb on - strand, within GFF2679at 102.739 kb on - strand, within GFF2679at 102.739 kb on - strand, within GFF2679at 102.739 kb on - strand, within GFF2679at 102.765 kb on + strandat 102.765 kb on + strandat 102.766 kb on - strandat 102.929 kb on - strandat 102.929 kb on - strandat 103.033 kb on + strand, within GFF2680at 103.471 kb on + strandat 103.472 kb on - strandat 103.862 kb on + strand, within GFF2681at 103.862 kb on + strand, within GFF2681at 103.862 kb on + strand, within GFF2681at 103.863 kb on - strand, within GFF2681at 103.863 kb on - strand, within GFF2681at 103.863 kb on - strand, within GFF2681at 103.877 kb on + strand, within GFF2681at 103.877 kb on + strand, within GFF2681at 103.877 kb on + strand, within GFF2681at 103.877 kb on + strand, within GFF2681at 103.877 kb on + strand, within GFF2681at 103.877 kb on + strand, within GFF2681at 103.878 kb on - strand, within GFF2681at 103.878 kb on - strand, within GFF2681at 103.878 kb on - strand, within GFF2681at 103.878 kb on - strand, within GFF2681at 103.949 kb on + strand, within GFF2681at 103.950 kb on - strand, within GFF2681at 103.950 kb on - strand, within GFF2681at 104.120 kb on + strand, within GFF2681at 104.120 kb on + strand, within GFF2681at 104.121 kb on - strand, within GFF2681at 104.339 kb on + strand, within GFF2681at 104.345 kb on + strand, within GFF2681

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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102,186 + GFF2679 0.53 +0.5
102,186 + GFF2679 0.53 -0.4
102,187 - GFF2679 0.53 -0.2
102,187 - GFF2679 0.53 -1.4
102,187 - GFF2679 0.53 +0.8
102,187 - GFF2679 0.53 +0.6
102,292 - GFF2679 0.60 -0.4
102,292 - GFF2679 0.60 -0.3
102,292 - GFF2679 0.60 +0.6
102,296 + GFF2679 0.60 +0.4
102,297 - GFF2679 0.60 -0.1
102,456 + GFF2679 0.71 +0.9
102,549 + GFF2679 0.77 +1.1
102,550 - GFF2679 0.77 -0.5
102,550 - GFF2679 0.77 +1.1
102,550 - GFF2679 0.77 -1.3
102,738 + GFF2679 0.89 -0.6
102,739 - GFF2679 0.89 +0.5
102,739 - GFF2679 0.89 -0.3
102,739 - GFF2679 0.89 -0.4
102,739 - GFF2679 0.89 -0.5
102,765 + -0.3
102,765 + -0.5
102,766 - +0.2
102,929 - +0.0
102,929 - +0.4
103,033 + GFF2680 0.23 -0.8
103,471 + +0.1
103,472 - +0.2
103,862 + GFF2681 0.12 -1.1
103,862 + GFF2681 0.12 +0.2
103,862 + GFF2681 0.12 -0.3
103,863 - GFF2681 0.12 +0.7
103,863 - GFF2681 0.12 -0.2
103,863 - GFF2681 0.12 +0.1
103,877 + GFF2681 0.13 -1.8
103,877 + GFF2681 0.13 -0.1
103,877 + GFF2681 0.13 -0.3
103,877 + GFF2681 0.13 +0.3
103,877 + GFF2681 0.13 -0.3
103,877 + GFF2681 0.13 -0.6
103,878 - GFF2681 0.13 -2.2
103,878 - GFF2681 0.13 +0.3
103,878 - GFF2681 0.13 -0.5
103,878 - GFF2681 0.13 +0.5
103,949 + GFF2681 0.18 -0.4
103,950 - GFF2681 0.18 +0.3
103,950 - GFF2681 0.18 -0.8
104,120 + GFF2681 0.29 -0.6
104,120 + GFF2681 0.29 -0.5
104,121 - GFF2681 0.29 -0.2
104,339 + GFF2681 0.43 +0.7
104,345 + GFF2681 0.43 +0.0

Or see this region's nucleotide sequence