Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2671 and GFF2672 are separated by 11 nucleotides GFF2672 and GFF2673 overlap by 1 nucleotides GFF2673 and GFF2674 overlap by 4 nucleotides GFF2674 and GFF2675 are separated by 2 nucleotides
GFF2671 - Domain of unknown function / Efflux ABC transporter, permease protein, at 93,134 to 94,291
GFF2671
GFF2672 - ABC transporter, ATP-binding protein, at 94,303 to 95,211
GFF2672
GFF2673 - FIG00655207: hypothetical protein, at 95,211 to 96,191
GFF2673
GFF2674 - FIG00653968: hypothetical protein, at 96,188 to 96,583
GFF2674
GFF2675 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 96,586 to 97,722
GFF2675
Position (kb) 95
96
97 Strain fitness (log2 ratio) -1
0
1 at 94.634 kb on + strand, within GFF2672 at 94.634 kb on + strand, within GFF2672 at 94.634 kb on + strand, within GFF2672 at 94.635 kb on - strand, within GFF2672 at 94.635 kb on - strand, within GFF2672 at 94.646 kb on + strand, within GFF2672 at 94.647 kb on - strand, within GFF2672 at 94.647 kb on - strand, within GFF2672 at 94.647 kb on - strand, within GFF2672 at 94.647 kb on - strand, within GFF2672 at 94.950 kb on - strand, within GFF2672 at 95.180 kb on + strand at 95.441 kb on - strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.681 kb on - strand, within GFF2673 at 95.681 kb on - strand, within GFF2673 at 95.785 kb on + strand, within GFF2673 at 95.785 kb on + strand, within GFF2673 at 95.807 kb on - strand, within GFF2673 at 95.807 kb on - strand, within GFF2673 at 95.857 kb on + strand, within GFF2673 at 95.869 kb on + strand, within GFF2673 at 95.869 kb on + strand, within GFF2673 at 96.064 kb on + strand, within GFF2673 at 96.064 kb on + strand, within GFF2673 at 96.357 kb on + strand, within GFF2674 at 96.357 kb on + strand, within GFF2674 at 96.357 kb on + strand, within GFF2674 at 96.357 kb on + strand, within GFF2674 at 96.357 kb on + strand, within GFF2674 at 96.358 kb on - strand, within GFF2674 at 96.358 kb on - strand, within GFF2674 at 96.366 kb on + strand, within GFF2674 at 96.519 kb on + strand, within GFF2674 at 96.519 kb on + strand, within GFF2674 at 96.519 kb on + strand, within GFF2674 at 96.520 kb on - strand, within GFF2674 at 96.587 kb on + strand at 96.588 kb on - strand at 96.588 kb on - strand at 96.602 kb on + strand at 96.602 kb on + strand at 96.602 kb on + strand at 96.602 kb on + strand at 96.602 kb on + strand at 96.602 kb on + strand at 96.603 kb on - strand at 96.603 kb on - strand at 96.603 kb on - strand at 96.603 kb on - strand at 96.603 kb on - strand at 96.704 kb on + strand, within GFF2675 at 96.705 kb on - strand, within GFF2675 at 96.705 kb on - strand, within GFF2675 at 96.705 kb on - strand, within GFF2675 at 96.705 kb on - strand, within GFF2675 at 96.705 kb on - strand, within GFF2675 at 96.815 kb on + strand, within GFF2675 at 96.815 kb on + strand, within GFF2675 at 96.907 kb on - strand, within GFF2675 at 96.907 kb on - strand, within GFF2675 at 96.907 kb on - strand, within GFF2675 at 97.040 kb on + strand, within GFF2675 at 97.040 kb on + strand, within GFF2675 at 97.041 kb on - strand, within GFF2675
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 94,634 + GFF2672 0.36 +0.2 94,634 + GFF2672 0.36 +0.1 94,634 + GFF2672 0.36 +0.6 94,635 - GFF2672 0.37 -1.1 94,635 - GFF2672 0.37 -1.1 94,646 + GFF2672 0.38 +1.1 94,647 - GFF2672 0.38 +0.1 94,647 - GFF2672 0.38 -0.2 94,647 - GFF2672 0.38 -0.4 94,647 - GFF2672 0.38 -0.6 94,950 - GFF2672 0.71 -0.2 95,180 + -0.2 95,441 - GFF2673 0.23 +0.0 95,680 + GFF2673 0.48 +0.4 95,680 + GFF2673 0.48 -0.3 95,680 + GFF2673 0.48 +0.8 95,680 + GFF2673 0.48 -1.3 95,680 + GFF2673 0.48 +0.5 95,680 + GFF2673 0.48 -0.2 95,680 + GFF2673 0.48 -0.0 95,680 + GFF2673 0.48 -1.0 95,680 + GFF2673 0.48 -0.6 95,681 - GFF2673 0.48 -0.5 95,681 - GFF2673 0.48 +0.2 95,785 + GFF2673 0.59 +1.0 95,785 + GFF2673 0.59 +0.3 95,807 - GFF2673 0.61 -0.2 95,807 - GFF2673 0.61 -0.4 95,857 + GFF2673 0.66 +0.5 95,869 + GFF2673 0.67 +0.7 95,869 + GFF2673 0.67 +1.1 96,064 + GFF2673 0.87 +1.1 96,064 + GFF2673 0.87 -0.4 96,357 + GFF2674 0.43 +0.0 96,357 + GFF2674 0.43 -0.7 96,357 + GFF2674 0.43 -0.3 96,357 + GFF2674 0.43 -0.9 96,357 + GFF2674 0.43 +0.0 96,358 - GFF2674 0.43 -1.5 96,358 - GFF2674 0.43 +0.3 96,366 + GFF2674 0.45 -0.8 96,519 + GFF2674 0.84 -0.1 96,519 + GFF2674 0.84 -0.4 96,519 + GFF2674 0.84 -0.1 96,520 - GFF2674 0.84 +0.5 96,587 + -0.8 96,588 - -0.0 96,588 - -0.1 96,602 + -1.6 96,602 + -0.2 96,602 + +0.8 96,602 + -0.7 96,602 + +1.1 96,602 + -0.2 96,603 - -1.1 96,603 - -1.1 96,603 - +0.7 96,603 - -0.1 96,603 - +0.3 96,704 + GFF2675 0.10 -0.5 96,705 - GFF2675 0.10 -0.0 96,705 - GFF2675 0.10 -0.7 96,705 - GFF2675 0.10 -0.5 96,705 - GFF2675 0.10 +0.6 96,705 - GFF2675 0.10 -0.1 96,815 + GFF2675 0.20 -0.1 96,815 + GFF2675 0.20 +0.0 96,907 - GFF2675 0.28 -0.8 96,907 - GFF2675 0.28 -0.1 96,907 - GFF2675 0.28 -0.3 97,040 + GFF2675 0.40 +0.3 97,040 + GFF2675 0.40 +0.3 97,041 - GFF2675 0.40 -0.3
Or see this region's nucleotide sequence