Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2662 and GFF2663 are separated by 73 nucleotides GFF2663 and GFF2664 overlap by 4 nucleotides GFF2664 and GFF2665 are separated by 18 nucleotides
GFF2662 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 84,553 to 85,506
GFF2662
GFF2663 - FIG022979: MoxR-like ATPases, at 85,580 to 86,500
GFF2663
GFF2664 - FIG002343: hypothetical protein, at 86,497 to 87,474
GFF2664
GFF2665 - FIG001454: Transglutaminase-like enzymes, putative cysteine proteases, at 87,493 to 89,514
GFF2665
Position (kb) 86
87
88 Strain fitness (log2 ratio) -2
-1
0
1
2 at 85.519 kb on + strand at 85.519 kb on + strand at 85.520 kb on - strand at 85.520 kb on - strand at 85.551 kb on + strand at 85.552 kb on - strand at 85.552 kb on - strand at 85.552 kb on - strand at 85.552 kb on - strand at 85.552 kb on - strand at 85.573 kb on + strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.579 kb on + strand at 85.579 kb on + strand at 85.579 kb on + strand at 85.579 kb on + strand at 85.580 kb on - strand at 85.586 kb on + strand at 85.599 kb on + strand at 85.599 kb on + strand at 85.600 kb on - strand at 85.600 kb on - strand at 85.611 kb on + strand at 85.612 kb on - strand at 85.621 kb on + strand at 85.621 kb on + strand at 85.621 kb on + strand at 85.622 kb on - strand at 85.826 kb on + strand, within GFF2663 at 85.826 kb on + strand, within GFF2663 at 85.826 kb on + strand, within GFF2663 at 85.826 kb on + strand, within GFF2663 at 85.826 kb on + strand, within GFF2663 at 85.827 kb on - strand, within GFF2663 at 85.827 kb on - strand, within GFF2663 at 86.246 kb on + strand, within GFF2663 at 86.246 kb on + strand, within GFF2663 at 86.247 kb on - strand, within GFF2663 at 86.247 kb on - strand, within GFF2663 at 86.247 kb on - strand, within GFF2663 at 86.247 kb on - strand, within GFF2663 at 86.247 kb on - strand, within GFF2663 at 86.369 kb on + strand, within GFF2663 at 86.369 kb on + strand, within GFF2663 at 86.369 kb on + strand, within GFF2663 at 86.370 kb on - strand, within GFF2663 at 86.370 kb on - strand, within GFF2663 at 86.370 kb on - strand, within GFF2663 at 86.370 kb on - strand, within GFF2663 at 86.593 kb on + strand at 86.593 kb on + strand at 86.593 kb on + strand at 86.593 kb on + strand at 86.594 kb on - strand at 86.594 kb on - strand at 86.666 kb on - strand, within GFF2664 at 86.684 kb on - strand, within GFF2664 at 86.684 kb on - strand, within GFF2664 at 86.848 kb on + strand, within GFF2664 at 86.849 kb on - strand, within GFF2664 at 87.053 kb on - strand, within GFF2664 at 87.727 kb on + strand, within GFF2665 at 87.727 kb on + strand, within GFF2665 at 87.727 kb on + strand, within GFF2665 at 87.728 kb on - strand, within GFF2665 at 87.878 kb on - strand, within GFF2665 at 87.878 kb on - strand, within GFF2665 at 88.219 kb on + strand, within GFF2665 at 88.219 kb on + strand, within GFF2665 at 88.220 kb on - strand, within GFF2665 at 88.337 kb on - strand, within GFF2665 at 88.337 kb on - strand, within GFF2665
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 85,519 + +0.9 85,519 + -0.2 85,520 - -0.8 85,520 - -0.3 85,551 + +1.2 85,552 - -0.1 85,552 - +0.1 85,552 - +1.5 85,552 - -0.3 85,552 - -0.7 85,573 + -0.2 85,574 - +0.4 85,574 - +0.4 85,574 - -0.1 85,579 + -0.7 85,579 + -0.7 85,579 + +0.2 85,579 + +0.0 85,580 - -0.7 85,586 + -0.7 85,599 + +1.7 85,599 + -0.4 85,600 - -1.3 85,600 - -0.3 85,611 + -0.1 85,612 - -0.1 85,621 + -2.0 85,621 + +0.8 85,621 + +1.1 85,622 - +0.3 85,826 + GFF2663 0.27 -0.2 85,826 + GFF2663 0.27 -1.5 85,826 + GFF2663 0.27 -0.3 85,826 + GFF2663 0.27 -0.4 85,826 + GFF2663 0.27 -0.1 85,827 - GFF2663 0.27 +1.1 85,827 - GFF2663 0.27 -0.4 86,246 + GFF2663 0.72 -0.2 86,246 + GFF2663 0.72 -0.3 86,247 - GFF2663 0.72 -1.8 86,247 - GFF2663 0.72 -1.1 86,247 - GFF2663 0.72 -0.1 86,247 - GFF2663 0.72 -1.0 86,247 - GFF2663 0.72 -0.8 86,369 + GFF2663 0.86 -0.1 86,369 + GFF2663 0.86 -0.1 86,369 + GFF2663 0.86 -0.6 86,370 - GFF2663 0.86 +0.1 86,370 - GFF2663 0.86 -1.0 86,370 - GFF2663 0.86 -0.1 86,370 - GFF2663 0.86 +1.2 86,593 + +1.7 86,593 + -2.2 86,593 + -1.5 86,593 + -1.4 86,594 - +1.5 86,594 - -0.3 86,666 - GFF2664 0.17 -1.1 86,684 - GFF2664 0.19 +2.1 86,684 - GFF2664 0.19 -0.1 86,848 + GFF2664 0.36 -0.0 86,849 - GFF2664 0.36 +0.9 87,053 - GFF2664 0.57 -0.1 87,727 + GFF2665 0.12 +0.1 87,727 + GFF2665 0.12 +0.0 87,727 + GFF2665 0.12 -0.5 87,728 - GFF2665 0.12 -0.3 87,878 - GFF2665 0.19 -0.5 87,878 - GFF2665 0.19 +0.6 88,219 + GFF2665 0.36 -0.4 88,219 + GFF2665 0.36 +0.2 88,220 - GFF2665 0.36 -0.7 88,337 - GFF2665 0.42 +0.0 88,337 - GFF2665 0.42 -0.2
Or see this region's nucleotide sequence