Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2626 and GFF2627 overlap by 1 nucleotides GFF2627 and GFF2628 are separated by 33 nucleotides GFF2628 and GFF2629 are separated by 68 nucleotides
GFF2626 - major facilitator superfamily MFS_1, at 39,224 to 40,417
GFF2626
GFF2627 - Chorismate synthase (EC 4.2.3.5), at 40,417 to 41,526
GFF2627
GFF2628 - hypothetical protein, at 41,560 to 41,745
GFF2628
GFF2629 - hypothetical protein, at 41,814 to 42,896
GFF2629
Position (kb) 40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 39.697 kb on - strand, within GFF2626 at 39.714 kb on + strand, within GFF2626 at 39.732 kb on + strand, within GFF2626 at 39.732 kb on + strand, within GFF2626 at 39.732 kb on + strand, within GFF2626 at 39.733 kb on - strand, within GFF2626 at 39.733 kb on - strand, within GFF2626 at 39.733 kb on - strand, within GFF2626 at 40.144 kb on - strand, within GFF2626 at 40.225 kb on - strand, within GFF2626 at 40.317 kb on + strand at 40.318 kb on - strand at 40.347 kb on + strand at 40.347 kb on + strand at 40.347 kb on + strand at 40.348 kb on - strand at 40.348 kb on - strand at 40.348 kb on - strand at 40.418 kb on + strand at 40.418 kb on + strand at 40.418 kb on + strand at 40.419 kb on - strand at 40.419 kb on - strand at 40.445 kb on - strand at 40.836 kb on - strand, within GFF2627 at 40.862 kb on + strand, within GFF2627 at 40.955 kb on + strand, within GFF2627 at 40.955 kb on + strand, within GFF2627 at 40.956 kb on - strand, within GFF2627 at 40.956 kb on - strand, within GFF2627 at 41.081 kb on + strand, within GFF2627 at 41.081 kb on + strand, within GFF2627 at 41.196 kb on - strand, within GFF2627 at 41.243 kb on + strand, within GFF2627 at 41.244 kb on - strand, within GFF2627 at 41.312 kb on + strand, within GFF2627 at 41.312 kb on + strand, within GFF2627 at 41.313 kb on - strand, within GFF2627 at 41.313 kb on - strand, within GFF2627 at 41.537 kb on - strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.542 kb on + strand at 41.543 kb on - strand at 41.543 kb on - strand at 41.786 kb on + strand at 41.786 kb on + strand at 41.787 kb on - strand at 41.787 kb on - strand at 41.816 kb on - strand at 41.816 kb on - strand at 41.816 kb on - strand at 41.816 kb on - strand at 41.816 kb on - strand at 41.816 kb on - strand at 41.816 kb on - strand at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.081 kb on + strand, within GFF2629 at 42.082 kb on - strand, within GFF2629 at 42.082 kb on - strand, within GFF2629 at 42.082 kb on - strand, within GFF2629 at 42.082 kb on - strand, within GFF2629 at 42.082 kb on - strand, within GFF2629 at 42.082 kb on - strand, within GFF2629 at 42.082 kb on - strand, within GFF2629 at 42.108 kb on + strand, within GFF2629 at 42.109 kb on - strand, within GFF2629 at 42.109 kb on - strand, within GFF2629 at 42.109 kb on - strand, within GFF2629 at 42.109 kb on - strand, within GFF2629 at 42.119 kb on + strand, within GFF2629 at 42.119 kb on + strand, within GFF2629 at 42.119 kb on + strand, within GFF2629 at 42.119 kb on + strand, within GFF2629 at 42.120 kb on - strand, within GFF2629 at 42.120 kb on - strand, within GFF2629 at 42.120 kb on - strand, within GFF2629 at 42.120 kb on - strand, within GFF2629 at 42.120 kb on - strand, within GFF2629 at 42.120 kb on - strand, within GFF2629 at 42.123 kb on + strand, within GFF2629 at 42.123 kb on + strand, within GFF2629 at 42.123 kb on + strand, within GFF2629 at 42.123 kb on + strand, within GFF2629 at 42.123 kb on + strand, within GFF2629 at 42.123 kb on + strand, within GFF2629 at 42.124 kb on - strand, within GFF2629 at 42.327 kb on + strand, within GFF2629 at 42.327 kb on + strand, within GFF2629 at 42.327 kb on + strand, within GFF2629 at 42.328 kb on - strand, within GFF2629 at 42.328 kb on - strand, within GFF2629 at 42.328 kb on - strand, within GFF2629 at 42.353 kb on + strand, within GFF2629 at 42.353 kb on + strand, within GFF2629 at 42.353 kb on + strand, within GFF2629 at 42.353 kb on + strand, within GFF2629 at 42.353 kb on + strand, within GFF2629 at 42.353 kb on + strand, within GFF2629 at 42.354 kb on - strand, within GFF2629 at 42.354 kb on - strand, within GFF2629 at 42.354 kb on - strand, within GFF2629 at 42.459 kb on + strand, within GFF2629 at 42.459 kb on + strand, within GFF2629 at 42.460 kb on - strand, within GFF2629 at 42.460 kb on - strand, within GFF2629 at 42.460 kb on - strand, within GFF2629 at 42.466 kb on - strand, within GFF2629 at 42.489 kb on + strand, within GFF2629 at 42.521 kb on - strand, within GFF2629
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 39,697 - GFF2626 0.40 -0.1 39,714 + GFF2626 0.41 -1.5 39,732 + GFF2626 0.43 -1.5 39,732 + GFF2626 0.43 -0.9 39,732 + GFF2626 0.43 -0.4 39,733 - GFF2626 0.43 -0.2 39,733 - GFF2626 0.43 -0.6 39,733 - GFF2626 0.43 -0.2 40,144 - GFF2626 0.77 -0.1 40,225 - GFF2626 0.84 +0.3 40,317 + -0.3 40,318 - -0.8 40,347 + -1.1 40,347 + -0.5 40,347 + -2.3 40,348 - -0.5 40,348 - +0.0 40,348 - +0.5 40,418 + -1.6 40,418 + -0.8 40,418 + +0.4 40,419 - +0.1 40,419 - +0.3 40,445 - +1.2 40,836 - GFF2627 0.38 -2.8 40,862 + GFF2627 0.40 -1.4 40,955 + GFF2627 0.48 -1.1 40,955 + GFF2627 0.48 -0.8 40,956 - GFF2627 0.49 +0.3 40,956 - GFF2627 0.49 +0.5 41,081 + GFF2627 0.60 -0.1 41,081 + GFF2627 0.60 -0.7 41,196 - GFF2627 0.70 -1.7 41,243 + GFF2627 0.74 -0.1 41,244 - GFF2627 0.75 -1.1 41,312 + GFF2627 0.81 +1.5 41,312 + GFF2627 0.81 -0.1 41,313 - GFF2627 0.81 +0.5 41,313 - GFF2627 0.81 -2.1 41,537 - -0.3 41,542 + -1.1 41,542 + +0.9 41,542 + +0.8 41,542 + +0.7 41,543 - -0.3 41,543 - +1.0 41,786 + +0.9 41,786 + -0.4 41,787 - +1.5 41,787 - +2.1 41,816 - -1.4 41,816 - -0.2 41,816 - -0.4 41,816 - -0.2 41,816 - -0.8 41,816 - +0.5 41,816 - +1.3 42,081 + GFF2629 0.25 +0.6 42,081 + GFF2629 0.25 +0.5 42,081 + GFF2629 0.25 -0.3 42,081 + GFF2629 0.25 +0.7 42,081 + GFF2629 0.25 +0.1 42,081 + GFF2629 0.25 -0.3 42,081 + GFF2629 0.25 -0.2 42,081 + GFF2629 0.25 +0.3 42,081 + GFF2629 0.25 -0.2 42,082 - GFF2629 0.25 +1.5 42,082 - GFF2629 0.25 -1.2 42,082 - GFF2629 0.25 +0.5 42,082 - GFF2629 0.25 -1.7 42,082 - GFF2629 0.25 -0.4 42,082 - GFF2629 0.25 -1.0 42,082 - GFF2629 0.25 +0.7 42,108 + GFF2629 0.27 +0.0 42,109 - GFF2629 0.27 -0.2 42,109 - GFF2629 0.27 +0.2 42,109 - GFF2629 0.27 -0.2 42,109 - GFF2629 0.27 -0.5 42,119 + GFF2629 0.28 -0.0 42,119 + GFF2629 0.28 -1.8 42,119 + GFF2629 0.28 -1.1 42,119 + GFF2629 0.28 +0.5 42,120 - GFF2629 0.28 -0.8 42,120 - GFF2629 0.28 +0.4 42,120 - GFF2629 0.28 -0.0 42,120 - GFF2629 0.28 -0.3 42,120 - GFF2629 0.28 -0.5 42,120 - GFF2629 0.28 -0.6 42,123 + GFF2629 0.29 -0.0 42,123 + GFF2629 0.29 -1.1 42,123 + GFF2629 0.29 -0.6 42,123 + GFF2629 0.29 -1.5 42,123 + GFF2629 0.29 -0.8 42,123 + GFF2629 0.29 -1.0 42,124 - GFF2629 0.29 +0.7 42,327 + GFF2629 0.47 -0.2 42,327 + GFF2629 0.47 +0.1 42,327 + GFF2629 0.47 -1.2 42,328 - GFF2629 0.47 -0.2 42,328 - GFF2629 0.47 -0.4 42,328 - GFF2629 0.47 -0.5 42,353 + GFF2629 0.50 -1.5 42,353 + GFF2629 0.50 +0.4 42,353 + GFF2629 0.50 -0.1 42,353 + GFF2629 0.50 +0.1 42,353 + GFF2629 0.50 -0.1 42,353 + GFF2629 0.50 -0.0 42,354 - GFF2629 0.50 -0.4 42,354 - GFF2629 0.50 -0.3 42,354 - GFF2629 0.50 +0.2 42,459 + GFF2629 0.60 +0.1 42,459 + GFF2629 0.60 +0.7 42,460 - GFF2629 0.60 -1.0 42,460 - GFF2629 0.60 +0.2 42,460 - GFF2629 0.60 -0.7 42,466 - GFF2629 0.60 +0.2 42,489 + GFF2629 0.62 -0.9 42,521 - GFF2629 0.65 -1.1
Or see this region's nucleotide sequence