Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2584 and GFF2585 overlap by 16 nucleotides GFF2585 and GFF2586 are separated by 48 nucleotides
GFF2584 - Sulfate permease, at 639,807 to 641,486
GFF2584
GFF2585 - no description, at 641,471 to 641,584
GFF2585
GFF2586 - Hydrogenase assembly protein HoxX, at 641,633 to 643,354
GFF2586
Position (kb) 641
642 Strain fitness (log2 ratio) -2
-1
0
1 at 641.425 kb on + strand at 641.425 kb on + strand at 641.426 kb on - strand at 641.426 kb on - strand at 641.426 kb on - strand at 641.426 kb on - strand at 641.543 kb on + strand, within GFF2585 at 641.543 kb on + strand, within GFF2585 at 641.544 kb on - strand, within GFF2585 at 641.544 kb on - strand, within GFF2585 at 641.544 kb on - strand, within GFF2585 at 641.544 kb on - strand, within GFF2585 at 641.544 kb on - strand, within GFF2585 at 641.544 kb on - strand, within GFF2585 at 641.558 kb on + strand, within GFF2585 at 641.580 kb on + strand at 641.581 kb on - strand at 641.581 kb on - strand at 641.605 kb on + strand at 641.605 kb on + strand at 641.606 kb on - strand at 641.606 kb on - strand at 641.618 kb on + strand at 641.618 kb on + strand at 641.618 kb on + strand at 641.619 kb on - strand at 641.619 kb on - strand at 642.026 kb on + strand, within GFF2586 at 642.098 kb on + strand, within GFF2586 at 642.098 kb on + strand, within GFF2586 at 642.098 kb on + strand, within GFF2586 at 642.098 kb on + strand, within GFF2586 at 642.098 kb on + strand, within GFF2586 at 642.099 kb on - strand, within GFF2586 at 642.099 kb on - strand, within GFF2586 at 642.099 kb on - strand, within GFF2586 at 642.099 kb on - strand, within GFF2586 at 642.099 kb on - strand, within GFF2586 at 642.099 kb on - strand, within GFF2586 at 642.099 kb on - strand, within GFF2586 at 642.272 kb on + strand, within GFF2586 at 642.272 kb on + strand, within GFF2586 at 642.272 kb on + strand, within GFF2586 at 642.273 kb on - strand, within GFF2586 at 642.273 kb on - strand, within GFF2586 at 642.273 kb on - strand, within GFF2586 at 642.273 kb on - strand, within GFF2586 at 642.273 kb on - strand, within GFF2586 at 642.273 kb on - strand, within GFF2586 at 642.273 kb on - strand, within GFF2586 at 642.273 kb on - strand, within GFF2586 at 642.273 kb on - strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.429 kb on - strand, within GFF2586 at 642.429 kb on - strand, within GFF2586 at 642.429 kb on - strand, within GFF2586 at 642.429 kb on - strand, within GFF2586
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 641,425 + +0.5 641,425 + -0.3 641,426 - +0.1 641,426 - -0.6 641,426 - -1.0 641,426 - -0.4 641,543 + GFF2585 0.63 -0.3 641,543 + GFF2585 0.63 +0.5 641,544 - GFF2585 0.64 +0.6 641,544 - GFF2585 0.64 +0.7 641,544 - GFF2585 0.64 +0.7 641,544 - GFF2585 0.64 -0.2 641,544 - GFF2585 0.64 -1.3 641,544 - GFF2585 0.64 +0.1 641,558 + GFF2585 0.76 +0.5 641,580 + +0.6 641,581 - +0.5 641,581 - +0.2 641,605 + -0.5 641,605 + +1.3 641,606 - +1.7 641,606 - -0.5 641,618 + -0.3 641,618 + +0.1 641,618 + -0.0 641,619 - +1.1 641,619 - -0.1 642,026 + GFF2586 0.23 +0.2 642,098 + GFF2586 0.27 +0.3 642,098 + GFF2586 0.27 +0.2 642,098 + GFF2586 0.27 -0.5 642,098 + GFF2586 0.27 +0.2 642,098 + GFF2586 0.27 +0.6 642,099 - GFF2586 0.27 -0.5 642,099 - GFF2586 0.27 +0.9 642,099 - GFF2586 0.27 -1.1 642,099 - GFF2586 0.27 +1.4 642,099 - GFF2586 0.27 +0.4 642,099 - GFF2586 0.27 -0.4 642,099 - GFF2586 0.27 +0.2 642,272 + GFF2586 0.37 -0.4 642,272 + GFF2586 0.37 +0.2 642,272 + GFF2586 0.37 -0.4 642,273 - GFF2586 0.37 -1.8 642,273 - GFF2586 0.37 +0.4 642,273 - GFF2586 0.37 -0.1 642,273 - GFF2586 0.37 -0.6 642,273 - GFF2586 0.37 -0.1 642,273 - GFF2586 0.37 -1.3 642,273 - GFF2586 0.37 +0.3 642,273 - GFF2586 0.37 +0.2 642,273 - GFF2586 0.37 -0.1 642,428 + GFF2586 0.46 -0.2 642,428 + GFF2586 0.46 -0.2 642,428 + GFF2586 0.46 +0.0 642,428 + GFF2586 0.46 -0.9 642,428 + GFF2586 0.46 +0.1 642,428 + GFF2586 0.46 -1.0 642,429 - GFF2586 0.46 -0.3 642,429 - GFF2586 0.46 +0.2 642,429 - GFF2586 0.46 -0.7 642,429 - GFF2586 0.46 -0.8
Or see this region's nucleotide sequence