Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2391 and GFF2392 overlap by 4 nucleotides GFF2392 and GFF2393 are separated by 14 nucleotides GFF2393 and GFF2394 are separated by 34 nucleotides GFF2394 and GFF2395 are separated by 44 nucleotides
GFF2391 - KEGG: periplasmic protein TonB, at 441,715 to 442,368
GFF2391
GFF2392 - Biopolymer transport protein ExbD/TolR, at 442,365 to 442,799
GFF2392
GFF2393 - Biopolymer transport protein ExbD/TolR, at 442,814 to 443,242
GFF2393
GFF2394 - MotA/TolQ/ExbB proton channel family protein, at 443,277 to 444,146
GFF2394
GFF2395 - D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-), at 444,191 to 445,384
GFF2395
Position (kb) 443
444
445 Strain fitness (log2 ratio) -1
0
1 at 442.878 kb on + strand, within GFF2393 at 442.879 kb on - strand, within GFF2393 at 443.016 kb on + strand, within GFF2393 at 443.017 kb on - strand, within GFF2393 at 443.377 kb on + strand, within GFF2394 at 443.377 kb on + strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.836 kb on + strand, within GFF2394 at 443.837 kb on - strand, within GFF2394 at 444.646 kb on - strand, within GFF2395 at 444.828 kb on + strand, within GFF2395 at 444.829 kb on - strand, within GFF2395 at 445.116 kb on + strand, within GFF2395 at 445.117 kb on - strand, within GFF2395
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 442,878 + GFF2393 0.15 -0.6 442,879 - GFF2393 0.15 -0.3 443,016 + GFF2393 0.47 -0.1 443,017 - GFF2393 0.47 -1.1 443,377 + GFF2394 0.11 +0.4 443,377 + GFF2394 0.11 +0.0 443,504 - GFF2394 0.26 +0.7 443,504 - GFF2394 0.26 +1.2 443,504 - GFF2394 0.26 -0.5 443,504 - GFF2394 0.26 -0.4 443,504 - GFF2394 0.26 -0.5 443,836 + GFF2394 0.64 +1.5 443,837 - GFF2394 0.64 +0.8 444,646 - GFF2395 0.38 -1.1 444,828 + GFF2395 0.53 -1.2 444,829 - GFF2395 0.53 +0.3 445,116 + GFF2395 0.77 +0.2 445,117 - GFF2395 0.78 -0.1
Or see this region's nucleotide sequence