Strain Fitness in Variovorax sp. SCN45 around GFF239

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
266,262	+		GFF237	0.65	-0.3
266,262	+		GFF237	0.65	+0.7
266,262	+		GFF237	0.65	-0.1
266,262	+		GFF237	0.65	-0.6
266,262	+		GFF237	0.65	-0.8
266,262	+		GFF237	0.65	+0.3
266,262	+		GFF237	0.65	-1.1
266,263	-		GFF237	0.65	-0.9
266,421	+		GFF237	0.78	-0.8
266,506	+		GFF237	0.85	+1.6
266,506	+		GFF237	0.85	-1.8
266,506	+		GFF237	0.85	+0.0
266,506	+		GFF237	0.85	-0.3
266,506	+		GFF237	0.85	+0.2
266,712	-				-1.4
266,716	+				-0.8
266,745	+				-1.4
266,745	+				-0.8
266,746	-				+0.5
266,813	-				-0.7
266,824	+				-1.2
266,824	+				+1.2
266,825	-				+0.6
266,843	+				+0.2
266,844	-				-0.1
266,844	-				-1.0
266,844	-				+1.2
266,844	-				+0.9
266,844	-				-0.4
267,275	+		GFF239	0.12	+1.2
267,617	+		GFF239	0.89	+1.2
267,618	-		GFF239	0.90	+1.2
267,618	-		GFF239	0.90	+1.2
267,618	-		GFF239	0.90	-0.4
267,618	-		GFF239	0.90	+1.2
267,641	+				+1.2
267,642	-				+1.2
267,742	+				-1.0
267,742	+				-1.6
267,742	+				+0.6
267,940	+		GFF240	0.19	+0.2
267,941	-		GFF240	0.19	-1.2
268,123	+		GFF240	0.31	+1.2
268,123	+		GFF240	0.31	+1.2
268,123	+		GFF240	0.31	+1.2
268,123	+		GFF240	0.31	+1.2
268,123	+		GFF240	0.31	+0.2
268,124	-		GFF240	0.31	-0.8
268,124	-		GFF240	0.31	-0.6
268,124	-		GFF240	0.31	-0.2
268,124	-		GFF240	0.31	-1.1
268,124	-		GFF240	0.31	-1.1
268,454	-		GFF240	0.53	+1.0