Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2383 and GFF2384 are separated by 178 nucleotides GFF2384 and GFF2385 are separated by 40 nucleotides GFF2385 and GFF2386 are separated by 426 nucleotides GFF2386 and GFF2387 overlap by 13 nucleotides
GFF2383 - Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW, at 436,908 to 438,170
GFF2383
GFF2384 - no description, at 438,349 to 438,921
GFF2384
GFF2385 - no description, at 438,962 to 439,252
GFF2385
GFF2386 - Response regulator BaeR, at 439,679 to 439,999
GFF2386
GFF2387 - no description, at 439,987 to 440,280
GFF2387
Position (kb) 438
439
440 Strain fitness (log2 ratio) -2
-1
0
1 at 438.295 kb on + strand at 438.295 kb on + strand at 438.295 kb on + strand at 438.295 kb on + strand at 438.295 kb on + strand at 438.295 kb on + strand at 438.295 kb on + strand at 438.295 kb on + strand at 438.295 kb on + strand at 438.295 kb on + strand at 438.296 kb on - strand at 438.296 kb on - strand at 438.296 kb on - strand at 438.296 kb on - strand at 438.301 kb on + strand at 438.301 kb on + strand at 438.301 kb on + strand at 438.302 kb on - strand at 438.302 kb on - strand at 438.302 kb on - strand at 438.302 kb on - strand at 438.302 kb on - strand at 438.461 kb on - strand, within GFF2384 at 438.569 kb on + strand, within GFF2384 at 438.570 kb on - strand, within GFF2384 at 438.570 kb on - strand, within GFF2384 at 438.570 kb on - strand, within GFF2384 at 438.635 kb on + strand, within GFF2384 at 438.635 kb on + strand, within GFF2384 at 438.635 kb on + strand, within GFF2384 at 438.635 kb on + strand, within GFF2384 at 438.635 kb on + strand, within GFF2384 at 438.635 kb on + strand, within GFF2384 at 438.636 kb on - strand, within GFF2384 at 438.636 kb on - strand, within GFF2384 at 438.636 kb on - strand, within GFF2384 at 438.636 kb on - strand, within GFF2384 at 438.636 kb on - strand, within GFF2384 at 438.672 kb on + strand, within GFF2384 at 438.673 kb on - strand, within GFF2384 at 438.818 kb on + strand, within GFF2384 at 438.819 kb on - strand, within GFF2384 at 438.839 kb on + strand, within GFF2384 at 438.845 kb on + strand, within GFF2384 at 438.846 kb on - strand, within GFF2384 at 438.942 kb on + strand at 438.943 kb on - strand at 438.963 kb on + strand at 438.964 kb on - strand at 439.010 kb on - strand, within GFF2385 at 439.010 kb on - strand, within GFF2385 at 439.137 kb on - strand, within GFF2385 at 439.145 kb on - strand, within GFF2385 at 439.145 kb on - strand, within GFF2385 at 439.147 kb on - strand, within GFF2385 at 439.147 kb on - strand, within GFF2385 at 439.407 kb on + strand at 439.408 kb on - strand at 439.408 kb on - strand at 439.408 kb on - strand at 439.408 kb on - strand at 439.409 kb on + strand at 439.409 kb on + strand at 439.410 kb on - strand at 439.410 kb on - strand at 439.410 kb on - strand at 439.410 kb on - strand at 439.628 kb on - strand at 439.629 kb on + strand at 439.630 kb on - strand at 439.650 kb on + strand at 439.651 kb on - strand at 439.862 kb on + strand, within GFF2386 at 439.863 kb on - strand, within GFF2386 at 439.863 kb on - strand, within GFF2386 at 439.863 kb on - strand, within GFF2386 at 439.970 kb on + strand at 439.970 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 438,295 + -1.2 438,295 + +0.2 438,295 + -0.1 438,295 + -0.3 438,295 + -1.1 438,295 + +0.7 438,295 + +0.4 438,295 + -0.9 438,295 + +0.2 438,295 + -0.0 438,296 - -0.3 438,296 - -0.5 438,296 - +0.7 438,296 - +0.1 438,301 + +0.8 438,301 + -1.6 438,301 + -0.4 438,302 - +0.1 438,302 - -0.4 438,302 - -0.5 438,302 - +0.3 438,302 - -0.2 438,461 - GFF2384 0.20 -0.2 438,569 + GFF2384 0.38 -0.2 438,570 - GFF2384 0.39 -0.0 438,570 - GFF2384 0.39 -1.0 438,570 - GFF2384 0.39 -0.2 438,635 + GFF2384 0.50 -0.7 438,635 + GFF2384 0.50 +1.0 438,635 + GFF2384 0.50 -0.1 438,635 + GFF2384 0.50 +0.6 438,635 + GFF2384 0.50 +0.1 438,635 + GFF2384 0.50 -0.3 438,636 - GFF2384 0.50 +1.1 438,636 - GFF2384 0.50 -0.5 438,636 - GFF2384 0.50 -0.3 438,636 - GFF2384 0.50 +0.1 438,636 - GFF2384 0.50 +0.8 438,672 + GFF2384 0.56 +1.0 438,673 - GFF2384 0.57 -0.1 438,818 + GFF2384 0.82 +1.1 438,819 - GFF2384 0.82 +0.7 438,839 + GFF2384 0.86 +0.2 438,845 + GFF2384 0.87 +0.2 438,846 - GFF2384 0.87 -0.2 438,942 + -0.5 438,943 - +0.0 438,963 + +0.2 438,964 - +0.1 439,010 - GFF2385 0.16 -0.8 439,010 - GFF2385 0.16 -1.0 439,137 - GFF2385 0.60 +0.1 439,145 - GFF2385 0.63 -0.2 439,145 - GFF2385 0.63 -1.9 439,147 - GFF2385 0.64 -0.2 439,147 - GFF2385 0.64 -0.8 439,407 + -0.6 439,408 - -0.3 439,408 - -0.3 439,408 - -0.4 439,408 - +0.4 439,409 + -0.6 439,409 + -0.5 439,410 - -0.1 439,410 - -0.2 439,410 - -0.7 439,410 - -0.3 439,628 - -0.3 439,629 + -0.0 439,630 - +0.4 439,650 + +0.9 439,651 - -1.0 439,862 + GFF2386 0.57 +0.7 439,863 - GFF2386 0.57 +1.4 439,863 - GFF2386 0.57 -0.7 439,863 - GFF2386 0.57 -0.4 439,970 + -0.5 439,970 + +0.4
Or see this region's nucleotide sequence