Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2350 and GFF2351 overlap by 4 nucleotides GFF2351 and GFF2352 are separated by 2 nucleotides GFF2352 and GFF2353 are separated by 81 nucleotides GFF2353 and GFF2354 are separated by 89 nucleotides
GFF2350 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 400,157 to 401,053
GFF2350
GFF2351 - Outer membrane lipoprotein component of lipoprotein transport system LolB, at 401,050 to 401,586
GFF2351
GFF2352 - FIG140336: TPR domain protein, at 401,589 to 403,442
GFF2352
GFF2353 - Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23), at 403,524 to 404,336
GFF2353
GFF2354 - FIG00555615: hypothetical protein, at 404,426 to 406,387
GFF2354
Position (kb) 401
402
403
404 Strain fitness (log2 ratio) -2
-1
0
1
2 at 401.753 kb on - strand at 401.753 kb on - strand at 401.753 kb on - strand at 401.753 kb on - strand at 401.930 kb on - strand, within GFF2352 at 401.930 kb on - strand, within GFF2352 at 401.930 kb on - strand, within GFF2352 at 401.930 kb on - strand, within GFF2352 at 401.930 kb on - strand, within GFF2352 at 401.930 kb on - strand, within GFF2352 at 401.930 kb on - strand, within GFF2352 at 401.930 kb on - strand, within GFF2352 at 401.930 kb on - strand, within GFF2352 at 401.930 kb on - strand, within GFF2352 at 402.029 kb on - strand, within GFF2352 at 402.029 kb on - strand, within GFF2352 at 402.095 kb on - strand, within GFF2352 at 402.120 kb on + strand, within GFF2352 at 402.120 kb on + strand, within GFF2352 at 402.120 kb on + strand, within GFF2352 at 402.120 kb on + strand, within GFF2352 at 402.120 kb on + strand, within GFF2352 at 402.121 kb on + strand, within GFF2352 at 402.121 kb on - strand, within GFF2352 at 402.121 kb on - strand, within GFF2352 at 402.121 kb on - strand, within GFF2352 at 402.338 kb on - strand, within GFF2352 at 402.338 kb on - strand, within GFF2352 at 402.338 kb on - strand, within GFF2352 at 402.338 kb on - strand, within GFF2352 at 402.338 kb on - strand, within GFF2352 at 402.575 kb on - strand, within GFF2352 at 402.575 kb on - strand, within GFF2352 at 402.575 kb on - strand, within GFF2352 at 402.575 kb on - strand, within GFF2352 at 402.878 kb on - strand, within GFF2352 at 403.211 kb on - strand, within GFF2352 at 403.453 kb on + strand at 403.453 kb on + strand at 403.453 kb on + strand at 403.453 kb on + strand at 403.453 kb on + strand at 403.453 kb on + strand at 403.453 kb on + strand at 403.453 kb on + strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.454 kb on - strand at 403.517 kb on - strand at 403.534 kb on + strand at 403.600 kb on + strand at 403.692 kb on + strand, within GFF2353 at 403.692 kb on + strand, within GFF2353 at 403.692 kb on + strand, within GFF2353 at 403.692 kb on + strand, within GFF2353 at 403.693 kb on - strand, within GFF2353 at 403.693 kb on - strand, within GFF2353 at 403.693 kb on - strand, within GFF2353 at 403.693 kb on - strand, within GFF2353 at 403.863 kb on + strand, within GFF2353 at 403.863 kb on + strand, within GFF2353 at 403.864 kb on - strand, within GFF2353 at 403.864 kb on - strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.037 kb on + strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.038 kb on - strand, within GFF2353 at 404.212 kb on - strand, within GFF2353 at 404.212 kb on - strand, within GFF2353 at 404.212 kb on - strand, within GFF2353 at 404.212 kb on - strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.235 kb on + strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.236 kb on - strand, within GFF2353 at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.310 kb on + strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.311 kb on - strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.313 kb on + strand at 404.314 kb on - strand at 404.314 kb on - strand at 404.314 kb on - strand at 404.314 kb on - strand at 404.314 kb on - strand at 404.314 kb on - strand at 404.314 kb on - strand at 404.314 kb on - strand at 404.334 kb on + strand at 404.335 kb on - strand at 404.359 kb on + strand at 404.360 kb on - strand at 404.360 kb on - strand at 404.360 kb on - strand at 404.395 kb on - strand at 404.395 kb on - strand at 404.397 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 401,753 - -1.3 401,753 - +0.1 401,753 - +1.3 401,753 - +0.7 401,930 - GFF2352 0.18 +0.3 401,930 - GFF2352 0.18 +0.7 401,930 - GFF2352 0.18 -0.3 401,930 - GFF2352 0.18 -0.9 401,930 - GFF2352 0.18 -0.1 401,930 - GFF2352 0.18 -0.3 401,930 - GFF2352 0.18 +0.0 401,930 - GFF2352 0.18 +0.7 401,930 - GFF2352 0.18 +1.1 401,930 - GFF2352 0.18 -1.5 402,029 - GFF2352 0.24 +2.7 402,029 - GFF2352 0.24 -0.5 402,095 - GFF2352 0.27 -1.6 402,120 + GFF2352 0.29 +0.2 402,120 + GFF2352 0.29 -0.5 402,120 + GFF2352 0.29 -1.5 402,120 + GFF2352 0.29 +1.7 402,120 + GFF2352 0.29 +1.1 402,121 + GFF2352 0.29 -0.3 402,121 - GFF2352 0.29 +1.7 402,121 - GFF2352 0.29 +0.5 402,121 - GFF2352 0.29 +0.9 402,338 - GFF2352 0.40 +0.1 402,338 - GFF2352 0.40 +0.8 402,338 - GFF2352 0.40 +0.5 402,338 - GFF2352 0.40 +1.8 402,338 - GFF2352 0.40 +1.1 402,575 - GFF2352 0.53 -0.2 402,575 - GFF2352 0.53 -0.7 402,575 - GFF2352 0.53 -0.9 402,575 - GFF2352 0.53 +0.7 402,878 - GFF2352 0.70 +0.4 403,211 - GFF2352 0.87 +0.1 403,453 + -0.0 403,453 + -0.6 403,453 + +0.2 403,453 + +1.0 403,453 + -1.0 403,453 + -0.3 403,453 + -0.9 403,453 + -0.1 403,454 - -0.0 403,454 - +0.7 403,454 - -0.3 403,454 - +1.0 403,454 - -0.1 403,454 - -0.3 403,454 - +0.1 403,454 - -0.0 403,454 - -0.6 403,454 - -0.0 403,454 - -0.2 403,454 - -0.9 403,454 - -0.5 403,454 - -0.5 403,454 - -0.7 403,517 - +0.1 403,534 + +0.1 403,600 + -0.0 403,692 + GFF2353 0.21 -0.4 403,692 + GFF2353 0.21 -0.5 403,692 + GFF2353 0.21 +0.2 403,692 + GFF2353 0.21 -0.9 403,693 - GFF2353 0.21 -0.9 403,693 - GFF2353 0.21 -0.7 403,693 - GFF2353 0.21 +0.1 403,693 - GFF2353 0.21 +0.6 403,863 + GFF2353 0.42 -1.1 403,863 + GFF2353 0.42 +0.0 403,864 - GFF2353 0.42 -0.7 403,864 - GFF2353 0.42 +2.3 404,037 + GFF2353 0.63 -0.6 404,037 + GFF2353 0.63 +1.4 404,037 + GFF2353 0.63 +0.6 404,037 + GFF2353 0.63 -0.3 404,037 + GFF2353 0.63 +0.2 404,037 + GFF2353 0.63 +0.7 404,037 + GFF2353 0.63 -0.2 404,037 + GFF2353 0.63 -1.3 404,037 + GFF2353 0.63 +0.9 404,037 + GFF2353 0.63 -0.8 404,037 + GFF2353 0.63 -0.4 404,037 + GFF2353 0.63 +1.3 404,037 + GFF2353 0.63 -0.2 404,037 + GFF2353 0.63 +0.1 404,037 + GFF2353 0.63 +1.1 404,037 + GFF2353 0.63 +0.9 404,037 + GFF2353 0.63 +0.4 404,037 + GFF2353 0.63 -0.4 404,038 - GFF2353 0.63 +0.5 404,038 - GFF2353 0.63 -0.6 404,038 - GFF2353 0.63 +2.1 404,038 - GFF2353 0.63 -1.6 404,038 - GFF2353 0.63 +0.2 404,038 - GFF2353 0.63 -0.9 404,038 - GFF2353 0.63 +0.5 404,038 - GFF2353 0.63 +0.9 404,038 - GFF2353 0.63 -0.6 404,038 - GFF2353 0.63 -1.5 404,038 - GFF2353 0.63 -0.2 404,038 - GFF2353 0.63 -1.8 404,038 - GFF2353 0.63 +0.7 404,038 - GFF2353 0.63 +0.2 404,038 - GFF2353 0.63 -0.2 404,038 - GFF2353 0.63 +1.7 404,038 - GFF2353 0.63 -1.6 404,038 - GFF2353 0.63 -0.3 404,038 - GFF2353 0.63 -0.9 404,038 - GFF2353 0.63 -0.7 404,038 - GFF2353 0.63 -1.8 404,038 - GFF2353 0.63 -0.6 404,038 - GFF2353 0.63 -1.9 404,212 - GFF2353 0.85 -1.1 404,212 - GFF2353 0.85 -0.7 404,212 - GFF2353 0.85 +0.7 404,212 - GFF2353 0.85 +0.7 404,235 + GFF2353 0.87 -0.1 404,235 + GFF2353 0.87 +1.0 404,235 + GFF2353 0.87 +0.2 404,235 + GFF2353 0.87 -0.1 404,235 + GFF2353 0.87 -0.7 404,235 + GFF2353 0.87 -0.7 404,235 + GFF2353 0.87 -0.3 404,235 + GFF2353 0.87 -0.5 404,235 + GFF2353 0.87 -1.1 404,235 + GFF2353 0.87 -0.8 404,235 + GFF2353 0.87 -0.3 404,235 + GFF2353 0.87 +0.2 404,236 - GFF2353 0.88 -0.6 404,236 - GFF2353 0.88 -0.2 404,236 - GFF2353 0.88 +1.7 404,236 - GFF2353 0.88 +0.4 404,236 - GFF2353 0.88 +0.7 404,236 - GFF2353 0.88 -0.6 404,236 - GFF2353 0.88 -0.3 404,236 - GFF2353 0.88 +0.0 404,236 - GFF2353 0.88 -0.3 404,310 + +0.5 404,310 + +0.4 404,310 + -0.3 404,310 + -0.4 404,310 + +0.2 404,310 + -0.6 404,310 + +0.3 404,310 + +0.3 404,310 + -0.3 404,310 + +0.4 404,310 + +0.9 404,310 + -0.3 404,310 + -0.5 404,310 + -0.7 404,310 + +0.0 404,310 + +0.1 404,310 + +0.1 404,310 + +0.3 404,310 + -0.5 404,310 + +0.7 404,310 + -0.4 404,310 + +0.5 404,310 + +0.1 404,310 + -0.3 404,311 - +1.5 404,311 - -1.6 404,311 - -0.5 404,311 - -0.6 404,311 - -0.3 404,311 - +1.7 404,311 - -0.4 404,311 - -0.5 404,311 - -1.7 404,311 - -0.5 404,311 - -0.3 404,311 - -0.0 404,311 - -0.4 404,311 - +0.0 404,311 - +0.3 404,311 - +1.0 404,311 - -1.4 404,311 - -0.4 404,311 - -0.9 404,311 - +0.7 404,311 - -0.4 404,311 - +0.3 404,311 - -0.1 404,311 - +0.4 404,311 - +0.2 404,311 - +0.3 404,311 - +0.2 404,311 - -0.8 404,311 - -0.1 404,311 - -0.4 404,311 - -0.2 404,311 - -0.3 404,311 - -0.7 404,311 - -0.1 404,311 - +2.0 404,311 - -0.7 404,311 - +0.3 404,311 - +0.4 404,311 - -0.5 404,311 - -0.3 404,311 - +0.1 404,311 - -0.2 404,311 - -0.1 404,311 - -0.2 404,311 - +1.7 404,313 + -0.3 404,313 + -0.5 404,313 + -0.1 404,313 + -0.7 404,313 + -0.2 404,313 + -0.5 404,313 + +0.3 404,313 + -0.6 404,313 + +2.3 404,313 + -0.5 404,314 - +0.4 404,314 - -0.8 404,314 - -0.5 404,314 - +0.1 404,314 - -0.1 404,314 - +1.1 404,314 - -1.1 404,314 - -0.3 404,334 + +1.1 404,335 - -0.7 404,359 + -0.0 404,360 - +0.8 404,360 - +0.4 404,360 - -0.7 404,395 - +0.7 404,395 - -0.9 404,397 - -0.7
Or see this region's nucleotide sequence