Strain Fitness in Variovorax sp. SCN45 around GFF2307

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
357,473	+		GFF2306	0.19	-1.0
357,584	+		GFF2306	0.28	+0.1
357,584	+		GFF2306	0.28	-1.0
357,584	+		GFF2306	0.28	+0.6
357,869	+		GFF2306	0.51	+0.1
357,906	+		GFF2306	0.54	-1.1
357,906	+		GFF2306	0.54	-1.7
357,906	+		GFF2306	0.54	-0.1
357,992	+		GFF2306	0.61	-0.3
357,992	+		GFF2306	0.61	-1.1
357,992	+		GFF2306	0.61	+0.7
357,992	+		GFF2306	0.61	-0.1
357,992	+		GFF2306	0.61	-1.0
357,992	+		GFF2306	0.61	-1.0
357,992	+		GFF2306	0.61	-1.5
357,993	-		GFF2306	0.61	-1.3
357,993	-		GFF2306	0.61	-0.4
357,993	-		GFF2306	0.61	-1.1
357,993	-		GFF2306	0.61	-0.4
357,993	-		GFF2306	0.61	-0.3
357,993	-		GFF2306	0.61	-1.7
357,993	-		GFF2306	0.61	+0.1
357,993	-		GFF2306	0.61	+0.7
357,993	-		GFF2306	0.61	-0.9
357,993	-		GFF2306	0.61	-2.0
357,993	-		GFF2306	0.61	-1.5
358,142	+		GFF2306	0.74	-0.7
358,142	+		GFF2306	0.74	+0.3
358,142	+		GFF2306	0.74	-0.9
358,142	+		GFF2306	0.74	-0.9
358,143	-		GFF2306	0.74	-0.4
358,143	-		GFF2306	0.74	-0.5
358,143	-		GFF2306	0.74	-1.6
358,143	-		GFF2306	0.74	-0.6
358,143	-		GFF2306	0.74	-2.1
358,163	+		GFF2306	0.75	+0.2
358,163	+		GFF2306	0.75	-1.0
358,163	+		GFF2306	0.75	-1.3
358,163	+		GFF2306	0.75	-0.9
358,163	+		GFF2306	0.75	+0.2
358,163	+		GFF2306	0.75	-0.3
358,164	-		GFF2306	0.75	-0.5
358,164	-		GFF2306	0.75	-0.8
358,470	+				-0.5
358,470	+				-0.9
358,470	+				-1.5
358,470	+				-0.6
358,471	-				+0.1
358,522	+				-1.2
358,522	+				-1.2
358,522	+				-1.4
358,523	-				-2.0
358,882	+		GFF2307	0.46	-1.5
358,882	+		GFF2307	0.46	-1.6
358,882	+		GFF2307	0.46	-1.3
358,883	-		GFF2307	0.46	-1.6
358,883	-		GFF2307	0.46	-1.3
358,883	-		GFF2307	0.46	-1.8
358,883	-		GFF2307	0.46	-0.2
358,883	-		GFF2307	0.46	-0.5
358,883	-		GFF2307	0.46	-1.1
358,883	-		GFF2307	0.46	-1.1
359,060	-		GFF2307	0.66	-0.1
359,060	-		GFF2307	0.66	-0.6
359,074	+		GFF2307	0.67	-0.3
359,146	+		GFF2307	0.75	-0.3
359,146	+		GFF2307	0.75	-1.0
359,146	+		GFF2307	0.75	+0.1
359,146	+		GFF2307	0.75	-0.6
359,146	+		GFF2307	0.75	-0.7
359,147	-		GFF2307	0.75	-0.2
359,147	-		GFF2307	0.75	-0.3
359,147	-		GFF2307	0.75	-1.8
359,147	-		GFF2307	0.75	-1.3
359,147	-		GFF2307	0.75	-2.4
359,188	+		GFF2307	0.80	-1.4
359,188	+		GFF2307	0.80	-1.8
359,188	+		GFF2307	0.80	-1.3
359,189	-		GFF2307	0.80	-2.1
359,189	-		GFF2307	0.80	-1.7
359,189	-		GFF2307	0.80	+0.6
359,189	-		GFF2307	0.80	-0.9
359,189	-		GFF2307	0.80	-0.3
359,209	+		GFF2307	0.82	-2.7
359,209	+		GFF2307	0.82	-1.0
359,209	+		GFF2307	0.82	-1.8
359,209	+		GFF2307	0.82	-0.3
359,209	+		GFF2307	0.82	-1.1
359,210	-		GFF2307	0.82	-0.4
359,210	-		GFF2307	0.82	-0.5
359,275	+		GFF2307	0.89	-1.0
359,275	+		GFF2307	0.89	-0.8
359,275	+		GFF2307	0.89	-0.8
359,276	-		GFF2307	0.90	-0.4
359,276	-		GFF2307	0.90	-0.6
359,359	+				-0.1
359,359	+				-1.0
359,359	+				-1.1
359,359	+				+1.7
359,359	+				-0.0
359,359	+				-0.3
359,359	+				-0.1
359,359	+				+0.4
359,359	+				-0.9
359,359	+				+0.2
359,359	+				+0.2
359,359	+				-0.7
359,359	+				-0.9
359,359	+				-0.7
359,359	+				-0.8
359,360	-				-1.8
359,360	-				-0.4
359,360	-				-0.4
359,360	-				-0.0
359,360	-				-1.1
359,360	-				-1.3
359,360	-				-0.6
359,360	-				-1.9
359,360	-				-0.7
359,360	-				+1.7
359,360	-				-0.6
359,360	-				-0.5
359,360	-				+0.2
359,360	-				-0.5
359,360	-				-1.1
359,364	-				-0.9
359,522	+		GFF2308	0.22	+0.3
359,522	+		GFF2308	0.22	+0.1
359,756	+		GFF2308	0.60	-0.4
359,756	+		GFF2308	0.60	-0.4
359,756	+		GFF2308	0.60	-0.2
359,756	+		GFF2308	0.60	-0.7
359,756	+		GFF2308	0.60	-0.0
359,756	+		GFF2308	0.60	+0.8
359,756	+		GFF2308	0.60	-0.6
359,756	+		GFF2308	0.60	-0.8
359,756	+		GFF2308	0.60	-1.1
359,756	+		GFF2308	0.60	-0.4
359,757	-		GFF2308	0.60	-1.7
359,757	-		GFF2308	0.60	-0.2
359,757	-		GFF2308	0.60	+0.7
359,757	-		GFF2308	0.60	+0.1
359,757	-		GFF2308	0.60	-2.3
359,757	-		GFF2308	0.60	+0.1
359,757	-		GFF2308	0.60	-1.3
359,757	-		GFF2308	0.60	+0.0
359,757	-		GFF2308	0.60	-0.6
359,831	+		GFF2308	0.72	+0.3
359,831	+		GFF2308	0.72	-0.3
359,831	+		GFF2308	0.72	+0.6
359,831	+		GFF2308	0.72	-0.6
359,831	+		GFF2308	0.72	+0.1
359,831	+		GFF2308	0.72	-0.9
359,831	+		GFF2308	0.72	-0.6
359,831	+		GFF2308	0.72	+0.7
359,831	+		GFF2308	0.72	+0.5
359,832	-		GFF2308	0.72	+0.2
359,832	-		GFF2308	0.72	-0.7
359,832	-		GFF2308	0.72	+0.7
359,832	-		GFF2308	0.72	-0.7
359,832	-		GFF2308	0.72	-0.3
359,832	-		GFF2308	0.72	-0.2
359,832	-		GFF2308	0.72	-0.4
359,832	-		GFF2308	0.72	-0.8
359,832	-		GFF2308	0.72	+1.0
359,832	-		GFF2308	0.72	-0.7
359,832	-		GFF2308	0.72	+0.1
359,840	+		GFF2308	0.74	-0.5
359,840	+		GFF2308	0.74	-0.2
359,840	+		GFF2308	0.74	-0.3
359,840	+		GFF2308	0.74	-0.1
359,840	+		GFF2308	0.74	+1.1
359,840	+		GFF2308	0.74	+0.5
359,840	+		GFF2308	0.74	+0.5
359,840	+		GFF2308	0.74	+0.5
359,840	+		GFF2308	0.74	+0.9
359,841	-		GFF2308	0.74	-0.0
359,841	-		GFF2308	0.74	+0.0
359,841	-		GFF2308	0.74	-0.0
359,841	-		GFF2308	0.74	-0.9
359,841	-		GFF2308	0.74	+0.3
359,843	+		GFF2308	0.74	-0.5
359,843	+		GFF2308	0.74	+0.2
359,843	+		GFF2308	0.74	+0.2
359,843	+		GFF2308	0.74	-0.7
359,843	+		GFF2308	0.74	-0.2
359,843	+		GFF2308	0.74	-0.6
359,844	-		GFF2308	0.74	-1.6
359,844	-		GFF2308	0.74	+1.3
359,844	-		GFF2308	0.74	-0.6
359,844	-		GFF2308	0.74	-0.7
359,844	-		GFF2308	0.74	-1.4
359,844	-		GFF2308	0.74	-0.0
359,844	-		GFF2308	0.74	+1.0
359,844	-		GFF2308	0.74	-0.6
359,876	+		GFF2308	0.80	+0.6
359,876	+		GFF2308	0.80	-0.2
359,876	+		GFF2308	0.80	-1.2
359,876	+		GFF2308	0.80	-0.8
359,876	+		GFF2308	0.80	-1.2
359,877	-		GFF2308	0.80	+1.3
359,877	-		GFF2308	0.80	-0.4
359,877	-		GFF2308	0.80	-1.0
359,877	-		GFF2308	0.80	-1.2
359,877	-		GFF2308	0.80	-0.5
359,877	-		GFF2308	0.80	-1.4
359,877	-		GFF2308	0.80	+0.0
359,903	+		GFF2308	0.84	-0.0
359,903	+		GFF2308	0.84	-0.1
359,903	+		GFF2308	0.84	-1.0
359,903	+		GFF2308	0.84	-0.1
359,903	+		GFF2308	0.84	-0.2
359,903	+		GFF2308	0.84	+3.0
359,903	+		GFF2308	0.84	-0.3
359,903	-		GFF2308	0.84	+0.1
359,904	-		GFF2308	0.84	+0.2
359,904	-		GFF2308	0.84	+0.7
359,904	-		GFF2308	0.84	-0.7
359,904	-		GFF2308	0.84	-1.0
359,904	-		GFF2308	0.84	-0.2
359,904	-		GFF2308	0.84	-0.2
359,904	-		GFF2308	0.84	-0.8
359,904	-		GFF2308	0.84	+0.0
359,904	-		GFF2308	0.84	+0.3
359,904	-		GFF2308	0.84	-1.0
359,909	+		GFF2308	0.85	+0.5
359,909	+		GFF2308	0.85	-1.3
359,909	+		GFF2308	0.85	-2.0
359,909	+		GFF2308	0.85	-0.7
359,910	-		GFF2308	0.85	-0.6
359,910	-		GFF2308	0.85	+1.1
359,910	-		GFF2308	0.85	-2.1
359,936	+		GFF2308	0.89	-1.0
359,937	-		GFF2308	0.89	+0.0
359,937	-		GFF2308	0.89	-1.7
359,945	+				-0.1
359,946	-				-0.3
360,291	+		GFF2309	0.33	-1.0
360,291	+		GFF2309	0.33	-1.1
360,291	+		GFF2309	0.33	-0.8
360,291	+		GFF2309	0.33	+0.2
360,291	+		GFF2309	0.33	-0.8
360,291	+		GFF2309	0.33	-0.4
360,292	-		GFF2309	0.33	-0.4
360,292	-		GFF2309	0.33	+0.3
360,292	-		GFF2309	0.33	+0.7
360,292	-		GFF2309	0.33	+2.3
360,292	-		GFF2309	0.33	-1.1
360,292	-		GFF2309	0.33	-0.1
360,292	-		GFF2309	0.33	+0.0