Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2299 and GFF2300 are separated by 25 nucleotides GFF2300 and GFF2301 overlap by 1 nucleotides GFF2301 and GFF2302 are separated by 52 nucleotides GFF2302 and GFF2303 are separated by 77 nucleotides GFF2303 and GFF2304 are separated by 36 nucleotides
GFF2299 - hypothetical protein, at 353,428 to 353,544
GFF2299
GFF2300 - Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1, at 353,570 to 354,196
GFF2300
GFF2301 - no description, at 354,196 to 354,417
GFF2301
GFF2302 - Cytochrome c oxidase polypeptide III (EC 1.9.3.1), at 354,470 to 355,351
GFF2302
GFF2303 - Uncharacterized DUF2909 protein BB4826, at 355,429 to 355,650
GFF2303
GFF2304 - Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion, at 355,687 to 356,541
GFF2304
Position (kb) 354
355
356 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 353.587 kb on + strand at 353.587 kb on + strand at 353.587 kb on + strand at 353.587 kb on + strand at 353.588 kb on - strand at 353.657 kb on + strand, within GFF2300 at 353.658 kb on - strand, within GFF2300 at 353.676 kb on - strand, within GFF2300 at 353.676 kb on - strand, within GFF2300 at 353.676 kb on - strand, within GFF2300 at 353.905 kb on - strand, within GFF2300 at 353.906 kb on + strand, within GFF2300 at 353.906 kb on + strand, within GFF2300 at 353.906 kb on + strand, within GFF2300 at 353.906 kb on + strand, within GFF2300 at 353.906 kb on + strand, within GFF2300 at 353.906 kb on + strand, within GFF2300 at 353.906 kb on + strand, within GFF2300 at 353.906 kb on + strand, within GFF2300 at 353.906 kb on + strand, within GFF2300 at 353.906 kb on + strand, within GFF2300 at 353.906 kb on + strand, within GFF2300 at 353.906 kb on + strand, within GFF2300 at 353.907 kb on - strand, within GFF2300 at 353.907 kb on - strand, within GFF2300 at 353.907 kb on - strand, within GFF2300 at 353.907 kb on - strand, within GFF2300 at 353.907 kb on - strand, within GFF2300 at 353.907 kb on - strand, within GFF2300 at 353.960 kb on + strand, within GFF2300 at 353.960 kb on + strand, within GFF2300 at 353.961 kb on - strand, within GFF2300 at 353.961 kb on - strand, within GFF2300 at 353.984 kb on + strand, within GFF2300 at 353.984 kb on + strand, within GFF2300 at 353.984 kb on + strand, within GFF2300 at 354.020 kb on + strand, within GFF2300 at 354.020 kb on + strand, within GFF2300 at 354.020 kb on + strand, within GFF2300 at 354.021 kb on - strand, within GFF2300 at 354.113 kb on + strand, within GFF2300 at 354.113 kb on + strand, within GFF2300 at 354.113 kb on + strand, within GFF2300 at 354.113 kb on + strand, within GFF2300 at 354.113 kb on + strand, within GFF2300 at 354.113 kb on + strand, within GFF2300 at 354.114 kb on - strand, within GFF2300 at 354.114 kb on - strand, within GFF2300 at 354.114 kb on - strand, within GFF2300 at 354.114 kb on - strand, within GFF2300 at 354.301 kb on + strand, within GFF2301 at 354.301 kb on + strand, within GFF2301 at 354.469 kb on + strand at 354.469 kb on + strand at 354.469 kb on + strand at 354.469 kb on + strand at 354.470 kb on - strand at 354.470 kb on - strand at 354.470 kb on - strand at 354.470 kb on - strand at 354.470 kb on - strand at 354.470 kb on - strand at 354.470 kb on - strand at 354.500 kb on + strand at 354.500 kb on + strand at 354.500 kb on + strand at 354.503 kb on + strand at 354.503 kb on + strand at 354.503 kb on + strand at 354.503 kb on + strand at 354.503 kb on + strand at 354.503 kb on + strand at 354.504 kb on - strand at 354.504 kb on - strand at 354.504 kb on - strand at 354.504 kb on - strand at 354.504 kb on - strand at 354.504 kb on - strand at 354.504 kb on - strand at 354.696 kb on - strand, within GFF2302 at 354.742 kb on + strand, within GFF2302 at 354.742 kb on + strand, within GFF2302 at 354.742 kb on + strand, within GFF2302 at 354.742 kb on + strand, within GFF2302 at 354.742 kb on + strand, within GFF2302 at 354.743 kb on - strand, within GFF2302 at 354.743 kb on - strand, within GFF2302 at 355.094 kb on + strand, within GFF2302 at 355.094 kb on + strand, within GFF2302 at 355.094 kb on + strand, within GFF2302 at 355.095 kb on - strand, within GFF2302 at 355.100 kb on + strand, within GFF2302 at 355.100 kb on + strand, within GFF2302 at 355.100 kb on + strand, within GFF2302 at 355.100 kb on + strand, within GFF2302 at 355.100 kb on + strand, within GFF2302 at 355.101 kb on - strand, within GFF2302 at 355.101 kb on - strand, within GFF2302 at 355.101 kb on - strand, within GFF2302 at 355.101 kb on - strand, within GFF2302 at 355.112 kb on + strand, within GFF2302 at 355.112 kb on + strand, within GFF2302 at 355.112 kb on + strand, within GFF2302 at 355.113 kb on - strand, within GFF2302 at 355.113 kb on - strand, within GFF2302 at 355.113 kb on - strand, within GFF2302 at 355.113 kb on - strand, within GFF2302 at 355.113 kb on - strand, within GFF2302 at 355.148 kb on + strand, within GFF2302 at 355.148 kb on + strand, within GFF2302 at 355.148 kb on + strand, within GFF2302 at 355.148 kb on + strand, within GFF2302 at 355.149 kb on - strand, within GFF2302 at 355.149 kb on - strand, within GFF2302 at 355.149 kb on - strand, within GFF2302 at 355.149 kb on - strand, within GFF2302 at 355.149 kb on - strand, within GFF2302 at 355.292 kb on + strand at 355.292 kb on + strand at 355.328 kb on + strand at 355.328 kb on + strand at 355.328 kb on + strand at 355.328 kb on + strand at 355.328 kb on + strand at 355.328 kb on + strand at 355.328 kb on + strand at 355.328 kb on + strand at 355.329 kb on - strand at 355.329 kb on - strand at 355.329 kb on - strand at 355.329 kb on - strand at 355.329 kb on - strand at 355.329 kb on - strand at 355.329 kb on - strand at 355.340 kb on + strand at 355.341 kb on - strand at 355.430 kb on + strand at 355.430 kb on + strand at 355.430 kb on + strand at 355.430 kb on + strand at 355.430 kb on + strand at 355.430 kb on + strand at 355.430 kb on + strand at 355.430 kb on + strand at 355.430 kb on + strand at 355.430 kb on + strand at 355.430 kb on + strand at 355.430 kb on + strand at 355.430 kb on + strand at 355.431 kb on - strand at 355.431 kb on - strand at 355.431 kb on - strand at 355.431 kb on - strand at 355.431 kb on - strand at 355.431 kb on - strand at 355.431 kb on - strand at 355.431 kb on - strand at 355.431 kb on - strand at 355.431 kb on - strand at 355.431 kb on - strand at 355.463 kb on + strand, within GFF2303 at 355.463 kb on + strand, within GFF2303 at 355.463 kb on + strand, within GFF2303 at 355.463 kb on + strand, within GFF2303 at 355.463 kb on + strand, within GFF2303 at 355.463 kb on + strand, within GFF2303 at 355.463 kb on + strand, within GFF2303 at 355.464 kb on - strand, within GFF2303 at 355.464 kb on - strand, within GFF2303 at 355.464 kb on - strand, within GFF2303 at 355.464 kb on - strand, within GFF2303 at 355.464 kb on - strand, within GFF2303 at 355.643 kb on + strand at 355.644 kb on - strand at 355.644 kb on - strand at 355.644 kb on - strand at 355.660 kb on + strand at 355.660 kb on + strand at 355.661 kb on - strand at 355.661 kb on - strand at 355.661 kb on - strand at 355.705 kb on + strand at 355.705 kb on + strand at 355.705 kb on + strand at 355.706 kb on - strand at 355.706 kb on - strand at 355.907 kb on - strand, within GFF2304 at 355.963 kb on + strand, within GFF2304 at 355.963 kb on + strand, within GFF2304 at 355.963 kb on + strand, within GFF2304 at 355.964 kb on - strand, within GFF2304 at 356.002 kb on + strand, within GFF2304 at 356.002 kb on + strand, within GFF2304 at 356.002 kb on + strand, within GFF2304 at 356.002 kb on + strand, within GFF2304 at 356.002 kb on + strand, within GFF2304 at 356.002 kb on + strand, within GFF2304 at 356.003 kb on - strand, within GFF2304 at 356.003 kb on - strand, within GFF2304 at 356.003 kb on - strand, within GFF2304 at 356.003 kb on - strand, within GFF2304 at 356.003 kb on - strand, within GFF2304 at 356.003 kb on - strand, within GFF2304 at 356.269 kb on + strand, within GFF2304 at 356.270 kb on - strand, within GFF2304 at 356.335 kb on - strand, within GFF2304
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 353,587 + +0.3 353,587 + -1.1 353,587 + -0.1 353,587 + -0.2 353,588 - -0.3 353,657 + GFF2300 0.14 -2.8 353,658 - GFF2300 0.14 +0.1 353,676 - GFF2300 0.17 -0.4 353,676 - GFF2300 0.17 -0.9 353,676 - GFF2300 0.17 -2.3 353,905 - GFF2300 0.53 -0.3 353,906 + GFF2300 0.54 -0.4 353,906 + GFF2300 0.54 -0.5 353,906 + GFF2300 0.54 +0.5 353,906 + GFF2300 0.54 -0.5 353,906 + GFF2300 0.54 -1.6 353,906 + GFF2300 0.54 +0.2 353,906 + GFF2300 0.54 -0.6 353,906 + GFF2300 0.54 +0.0 353,906 + GFF2300 0.54 +0.7 353,906 + GFF2300 0.54 -0.5 353,906 + GFF2300 0.54 -0.8 353,906 + GFF2300 0.54 -0.6 353,907 - GFF2300 0.54 -1.2 353,907 - GFF2300 0.54 -0.1 353,907 - GFF2300 0.54 -0.4 353,907 - GFF2300 0.54 -0.4 353,907 - GFF2300 0.54 +0.4 353,907 - GFF2300 0.54 -1.8 353,960 + GFF2300 0.62 -0.9 353,960 + GFF2300 0.62 -1.8 353,961 - GFF2300 0.62 -0.6 353,961 - GFF2300 0.62 +0.3 353,984 + GFF2300 0.66 +0.7 353,984 + GFF2300 0.66 -1.7 353,984 + GFF2300 0.66 -2.9 354,020 + GFF2300 0.72 -1.1 354,020 + GFF2300 0.72 -0.8 354,020 + GFF2300 0.72 -2.3 354,021 - GFF2300 0.72 -1.1 354,113 + GFF2300 0.87 -1.5 354,113 + GFF2300 0.87 +0.1 354,113 + GFF2300 0.87 -0.9 354,113 + GFF2300 0.87 -0.4 354,113 + GFF2300 0.87 -2.3 354,113 + GFF2300 0.87 -1.5 354,114 - GFF2300 0.87 -2.0 354,114 - GFF2300 0.87 -0.9 354,114 - GFF2300 0.87 -1.0 354,114 - GFF2300 0.87 -1.3 354,301 + GFF2301 0.47 +0.7 354,301 + GFF2301 0.47 -0.6 354,469 + -0.8 354,469 + +0.1 354,469 + +0.3 354,469 + -0.3 354,470 - -0.1 354,470 - +0.1 354,470 - +1.7 354,470 - +0.2 354,470 - +1.1 354,470 - -0.3 354,470 - -1.2 354,500 + -0.8 354,500 + -0.9 354,500 + -0.9 354,503 + -0.1 354,503 + -1.2 354,503 + -0.6 354,503 + -0.9 354,503 + -1.0 354,503 + -1.0 354,504 - +1.4 354,504 - -0.2 354,504 - +0.7 354,504 - -0.3 354,504 - -0.2 354,504 - -0.4 354,504 - +0.2 354,696 - GFF2302 0.26 -0.5 354,742 + GFF2302 0.31 -1.1 354,742 + GFF2302 0.31 -0.0 354,742 + GFF2302 0.31 -0.9 354,742 + GFF2302 0.31 -0.9 354,742 + GFF2302 0.31 +1.1 354,743 - GFF2302 0.31 -0.7 354,743 - GFF2302 0.31 +0.7 355,094 + GFF2302 0.71 -1.6 355,094 + GFF2302 0.71 -0.3 355,094 + GFF2302 0.71 -0.7 355,095 - GFF2302 0.71 +0.0 355,100 + GFF2302 0.71 -0.2 355,100 + GFF2302 0.71 +1.0 355,100 + GFF2302 0.71 -1.5 355,100 + GFF2302 0.71 -0.5 355,100 + GFF2302 0.71 -1.1 355,101 - GFF2302 0.72 -0.9 355,101 - GFF2302 0.72 -1.7 355,101 - GFF2302 0.72 -3.2 355,101 - GFF2302 0.72 -0.4 355,112 + GFF2302 0.73 -0.8 355,112 + GFF2302 0.73 -0.5 355,112 + GFF2302 0.73 -1.2 355,113 - GFF2302 0.73 -1.0 355,113 - GFF2302 0.73 -1.0 355,113 - GFF2302 0.73 +0.6 355,113 - GFF2302 0.73 -1.3 355,113 - GFF2302 0.73 -1.5 355,148 + GFF2302 0.77 -0.3 355,148 + GFF2302 0.77 +0.1 355,148 + GFF2302 0.77 -1.1 355,148 + GFF2302 0.77 -2.2 355,149 - GFF2302 0.77 -1.8 355,149 - GFF2302 0.77 -0.5 355,149 - GFF2302 0.77 +0.4 355,149 - GFF2302 0.77 -0.3 355,149 - GFF2302 0.77 -1.7 355,292 + -1.0 355,292 + -0.9 355,328 + -1.9 355,328 + +0.6 355,328 + -0.2 355,328 + +0.0 355,328 + -0.7 355,328 + -0.7 355,328 + -1.2 355,328 + +0.2 355,329 - -0.9 355,329 - -1.1 355,329 - -0.7 355,329 - -0.3 355,329 - -1.1 355,329 - -1.1 355,329 - -1.4 355,340 + +0.2 355,341 - -1.5 355,430 + -2.0 355,430 + +0.2 355,430 + -0.4 355,430 + -0.1 355,430 + -1.0 355,430 + -0.4 355,430 + -0.2 355,430 + +0.6 355,430 + -0.8 355,430 + -0.0 355,430 + -1.5 355,430 + -0.9 355,430 + +0.0 355,431 - +1.2 355,431 - -0.6 355,431 - -0.7 355,431 - -0.7 355,431 - -0.7 355,431 - -0.1 355,431 - -0.6 355,431 - -0.2 355,431 - +1.5 355,431 - -0.2 355,431 - -0.6 355,463 + GFF2303 0.15 +0.9 355,463 + GFF2303 0.15 -0.2 355,463 + GFF2303 0.15 -0.0 355,463 + GFF2303 0.15 +0.5 355,463 + GFF2303 0.15 +0.1 355,463 + GFF2303 0.15 -0.3 355,463 + GFF2303 0.15 -0.4 355,464 - GFF2303 0.16 -0.1 355,464 - GFF2303 0.16 +0.3 355,464 - GFF2303 0.16 +0.5 355,464 - GFF2303 0.16 +1.4 355,464 - GFF2303 0.16 -1.2 355,643 + -1.4 355,644 - -1.3 355,644 - -0.6 355,644 - +0.0 355,660 + +0.1 355,660 + -0.4 355,661 - +0.5 355,661 - -0.2 355,661 - -1.4 355,705 + +0.5 355,705 + -1.8 355,705 + -0.6 355,706 - -1.3 355,706 - -1.9 355,907 - GFF2304 0.26 -1.0 355,963 + GFF2304 0.32 -0.9 355,963 + GFF2304 0.32 -0.9 355,963 + GFF2304 0.32 -0.9 355,964 - GFF2304 0.32 -1.1 356,002 + GFF2304 0.37 +1.3 356,002 + GFF2304 0.37 -0.0 356,002 + GFF2304 0.37 -1.1 356,002 + GFF2304 0.37 -0.7 356,002 + GFF2304 0.37 -1.0 356,002 + GFF2304 0.37 -1.0 356,003 - GFF2304 0.37 -0.1 356,003 - GFF2304 0.37 -0.2 356,003 - GFF2304 0.37 -0.6 356,003 - GFF2304 0.37 +0.1 356,003 - GFF2304 0.37 -0.9 356,003 - GFF2304 0.37 -0.8 356,269 + GFF2304 0.68 -0.5 356,270 - GFF2304 0.68 -1.3 356,335 - GFF2304 0.76 -1.1
Or see this region's nucleotide sequence