Strain Fitness in Variovorax sp. SCN45 around GFF2300

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
352,576	+		GFF2298	0.49	-1.3
352,576	+		GFF2298	0.49	-0.6
352,576	+		GFF2298	0.49	+0.3
352,576	+		GFF2298	0.49	-1.1
352,576	+		GFF2298	0.49	-0.5
352,576	+		GFF2298	0.49	-1.1
352,576	+		GFF2298	0.49	+0.5
352,576	+		GFF2298	0.49	-1.4
352,576	+		GFF2298	0.49	-1.3
352,577	-		GFF2298	0.49	-1.6
352,577	-		GFF2298	0.49	-0.2
352,577	-		GFF2298	0.49	+0.2
352,577	-		GFF2298	0.49	-1.4
352,577	-		GFF2298	0.49	+0.7
352,577	-		GFF2298	0.49	-1.0
352,577	-		GFF2298	0.49	-0.0
352,577	-		GFF2298	0.49	-0.6
352,577	-		GFF2298	0.49	-1.6
352,577	-		GFF2298	0.49	-0.0
352,666	+		GFF2298	0.54	-0.5
352,666	+		GFF2298	0.54	-1.0
352,666	+		GFF2298	0.54	-0.3
352,666	+		GFF2298	0.54	-0.8
352,666	+		GFF2298	0.54	-0.7
352,666	+		GFF2298	0.54	-1.5
352,667	-		GFF2298	0.54	-0.6
352,667	-		GFF2298	0.54	-1.8
352,667	-		GFF2298	0.54	-0.5
352,667	-		GFF2298	0.54	-0.9
352,667	-		GFF2298	0.54	-0.1
352,667	-		GFF2298	0.54	-0.9
352,667	-		GFF2298	0.54	-1.4
352,667	-		GFF2298	0.54	-1.4
352,667	-		GFF2298	0.54	-1.9
352,762	+		GFF2298	0.60	+1.1
352,762	+		GFF2298	0.60	-0.5
352,762	+		GFF2298	0.60	-0.5
352,762	+		GFF2298	0.60	-2.2
352,762	+		GFF2298	0.60	-0.4
352,762	+		GFF2298	0.60	-1.0
352,762	+		GFF2298	0.60	-0.7
352,762	+		GFF2298	0.60	+1.3
352,762	+		GFF2298	0.60	-1.6
352,763	-		GFF2298	0.60	-1.9
352,763	-		GFF2298	0.60	+0.5
352,763	-		GFF2298	0.60	-0.3
352,763	-		GFF2298	0.60	+0.1
352,763	-		GFF2298	0.60	-0.4
352,763	-		GFF2298	0.60	-1.2
352,763	-		GFF2298	0.60	-1.0
352,763	-		GFF2298	0.60	+0.4
352,763	-		GFF2298	0.60	-0.3
352,763	-		GFF2298	0.60	-1.3
352,763	-		GFF2298	0.60	-0.0
352,763	-		GFF2298	0.60	-0.7
352,763	-		GFF2298	0.60	+0.1
352,763	-		GFF2298	0.60	-1.4
352,763	-		GFF2298	0.60	-0.5
352,763	-		GFF2298	0.60	-0.6
352,954	+		GFF2298	0.72	-0.6
352,954	+		GFF2298	0.72	+1.7
352,954	+		GFF2298	0.72	-1.9
352,954	+		GFF2298	0.72	+0.5
352,954	+		GFF2298	0.72	-0.9
352,954	+		GFF2298	0.72	-0.2
352,954	+		GFF2298	0.72	-1.6
352,954	+		GFF2298	0.72	-1.2
352,954	+		GFF2298	0.72	-1.3
352,954	+		GFF2298	0.72	-0.2
352,954	+		GFF2298	0.72	+0.9
352,954	+		GFF2298	0.72	-1.9
352,954	+		GFF2298	0.72	-0.9
352,954	+		GFF2298	0.72	-1.5
352,954	+		GFF2298	0.72	-0.6
352,954	+		GFF2298	0.72	-0.2
352,954	+		GFF2298	0.72	-0.2
352,954	+		GFF2298	0.72	+0.9
352,955	-		GFF2298	0.72	-2.1
352,955	-		GFF2298	0.72	-0.6
352,955	-		GFF2298	0.72	-0.9
352,955	-		GFF2298	0.72	-2.1
352,955	-		GFF2298	0.72	-1.0
352,955	-		GFF2298	0.72	-0.6
352,955	-		GFF2298	0.72	-0.1
352,955	-		GFF2298	0.72	-1.5
352,955	-		GFF2298	0.72	-0.8
352,955	-		GFF2298	0.72	-1.2
352,955	-		GFF2298	0.72	-0.5
352,955	-		GFF2298	0.72	-1.5
352,955	-		GFF2298	0.72	-0.3
352,955	-		GFF2298	0.72	-1.5
352,955	-		GFF2298	0.72	-1.2
352,955	-		GFF2298	0.72	-0.9
352,957	+		GFF2298	0.72	+0.9
352,957	+		GFF2298	0.72	+0.0
352,957	+		GFF2298	0.72	-1.0
352,957	+		GFF2298	0.72	-0.9
352,958	-		GFF2298	0.72	-1.6
352,958	-		GFF2298	0.72	+0.7
352,958	-		GFF2298	0.72	-2.5
352,958	-		GFF2298	0.72	-1.5
352,958	-		GFF2298	0.72	+1.1
352,958	-		GFF2298	0.72	-0.1
352,958	-		GFF2298	0.72	-2.9
352,958	-		GFF2298	0.72	-0.9
352,958	-		GFF2298	0.72	-1.1
352,958	-		GFF2298	0.72	-0.9
352,958	-		GFF2298	0.72	+1.0
352,979	-		GFF2298	0.73	-1.3
352,979	-		GFF2298	0.73	-0.1
352,979	-		GFF2298	0.73	-1.1
353,023	+		GFF2298	0.76	-0.5
353,023	+		GFF2298	0.76	-0.8
353,023	+		GFF2298	0.76	-0.9
353,023	+		GFF2298	0.76	-0.3
353,023	+		GFF2298	0.76	-0.4
353,023	+		GFF2298	0.76	-0.9
353,024	-		GFF2298	0.76	-1.0
353,024	-		GFF2298	0.76	+0.0
353,024	-		GFF2298	0.76	-0.3
353,024	-		GFF2298	0.76	-1.1
353,024	-		GFF2298	0.76	-0.2
353,024	-		GFF2298	0.76	-0.9
353,024	-		GFF2298	0.76	-0.1
353,024	-		GFF2298	0.76	-1.8
353,026	+		GFF2298	0.76	+0.7
353,026	+		GFF2298	0.76	-0.8
353,026	+		GFF2298	0.76	-1.0
353,027	-		GFF2298	0.76	-0.7
353,027	-		GFF2298	0.76	-0.9
353,056	+		GFF2298	0.78	+0.7
353,056	+		GFF2298	0.78	-0.2
353,056	+		GFF2298	0.78	-0.3
353,056	+		GFF2298	0.78	+2.3
353,056	+		GFF2298	0.78	-0.3
353,056	+		GFF2298	0.78	-1.0
353,056	+		GFF2298	0.78	+1.5
353,056	+		GFF2298	0.78	-0.9
353,057	-		GFF2298	0.78	+0.7
353,057	-		GFF2298	0.78	-0.2
353,057	-		GFF2298	0.78	-2.3
353,057	-		GFF2298	0.78	+0.2
353,057	-		GFF2298	0.78	-0.4
353,171	-		GFF2298	0.85	-0.1
353,171	-		GFF2298	0.85	-0.5
353,242	+		GFF2298	0.89	-0.8
353,242	+		GFF2298	0.89	-1.2
353,242	+		GFF2298	0.89	-0.0
353,242	+		GFF2298	0.89	-0.4
353,242	+		GFF2298	0.89	-0.9
353,242	+		GFF2298	0.89	-1.5
353,243	-		GFF2298	0.89	-0.4
353,243	-		GFF2298	0.89	-2.1
353,243	-		GFF2298	0.89	-1.0
353,243	-		GFF2298	0.89	-0.3
353,243	-		GFF2298	0.89	+1.1
353,243	-		GFF2298	0.89	-0.9
353,243	-		GFF2298	0.89	-0.9
353,243	-		GFF2298	0.89	-0.5
353,587	+				+0.3
353,587	+				-1.1
353,587	+				-0.1
353,587	+				-0.2
353,588	-				-0.3
353,657	+		GFF2300	0.14	-2.8
353,658	-		GFF2300	0.14	+0.1
353,676	-		GFF2300	0.17	-0.4
353,676	-		GFF2300	0.17	-0.9
353,676	-		GFF2300	0.17	-2.3
353,905	-		GFF2300	0.53	-0.3
353,906	+		GFF2300	0.54	-0.4
353,906	+		GFF2300	0.54	-0.5
353,906	+		GFF2300	0.54	+0.5
353,906	+		GFF2300	0.54	-0.5
353,906	+		GFF2300	0.54	-1.6
353,906	+		GFF2300	0.54	+0.2
353,906	+		GFF2300	0.54	-0.6
353,906	+		GFF2300	0.54	+0.0
353,906	+		GFF2300	0.54	+0.7
353,906	+		GFF2300	0.54	-0.5
353,906	+		GFF2300	0.54	-0.8
353,906	+		GFF2300	0.54	-0.6
353,907	-		GFF2300	0.54	-1.2
353,907	-		GFF2300	0.54	-0.1
353,907	-		GFF2300	0.54	-0.4
353,907	-		GFF2300	0.54	-0.4
353,907	-		GFF2300	0.54	+0.4
353,907	-		GFF2300	0.54	-1.8
353,960	+		GFF2300	0.62	-0.9
353,960	+		GFF2300	0.62	-1.8
353,961	-		GFF2300	0.62	-0.6
353,961	-		GFF2300	0.62	+0.3
353,984	+		GFF2300	0.66	+0.7
353,984	+		GFF2300	0.66	-1.7
353,984	+		GFF2300	0.66	-2.9
354,020	+		GFF2300	0.72	-1.1
354,020	+		GFF2300	0.72	-0.8
354,020	+		GFF2300	0.72	-2.3
354,021	-		GFF2300	0.72	-1.1
354,113	+		GFF2300	0.87	-1.5
354,113	+		GFF2300	0.87	+0.1
354,113	+		GFF2300	0.87	-0.9
354,113	+		GFF2300	0.87	-0.4
354,113	+		GFF2300	0.87	-2.3
354,113	+		GFF2300	0.87	-1.5
354,114	-		GFF2300	0.87	-2.0
354,114	-		GFF2300	0.87	-0.9
354,114	-		GFF2300	0.87	-1.0
354,114	-		GFF2300	0.87	-1.3
354,301	+		GFF2301	0.47	+0.7
354,301	+		GFF2301	0.47	-0.6
354,469	+				-0.8
354,469	+				+0.1
354,469	+				+0.3
354,469	+				-0.3
354,470	-				-0.1
354,470	-				+0.1
354,470	-				+1.7
354,470	-				+0.2
354,470	-				+1.1
354,470	-				-0.3
354,470	-				-1.2
354,500	+				-0.8
354,500	+				-0.9
354,500	+				-0.9
354,503	+				-0.1
354,503	+				-1.2
354,503	+				-0.6
354,503	+				-0.9
354,503	+				-1.0
354,503	+				-1.0
354,504	-				+1.4
354,504	-				-0.2
354,504	-				+0.7
354,504	-				-0.3
354,504	-				-0.2
354,504	-				-0.4
354,504	-				+0.2
354,696	-		GFF2302	0.26	-0.5
354,742	+		GFF2302	0.31	-1.1
354,742	+		GFF2302	0.31	-0.0
354,742	+		GFF2302	0.31	-0.9
354,742	+		GFF2302	0.31	-0.9
354,742	+		GFF2302	0.31	+1.1
354,743	-		GFF2302	0.31	-0.7
354,743	-		GFF2302	0.31	+0.7
355,094	+		GFF2302	0.71	-1.6
355,094	+		GFF2302	0.71	-0.3
355,094	+		GFF2302	0.71	-0.7
355,095	-		GFF2302	0.71	+0.0
355,100	+		GFF2302	0.71	-0.2
355,100	+		GFF2302	0.71	+1.0
355,100	+		GFF2302	0.71	-1.5
355,100	+		GFF2302	0.71	-0.5
355,100	+		GFF2302	0.71	-1.1
355,101	-		GFF2302	0.72	-0.9
355,101	-		GFF2302	0.72	-1.7
355,101	-		GFF2302	0.72	-3.2
355,101	-		GFF2302	0.72	-0.4
355,112	+		GFF2302	0.73	-0.8
355,112	+		GFF2302	0.73	-0.5
355,112	+		GFF2302	0.73	-1.2
355,113	-		GFF2302	0.73	-1.0
355,113	-		GFF2302	0.73	-1.0
355,113	-		GFF2302	0.73	+0.6
355,113	-		GFF2302	0.73	-1.3
355,113	-		GFF2302	0.73	-1.5
355,148	+		GFF2302	0.77	-0.3
355,148	+		GFF2302	0.77	+0.1
355,148	+		GFF2302	0.77	-1.1
355,148	+		GFF2302	0.77	-2.2
355,149	-		GFF2302	0.77	-1.8
355,149	-		GFF2302	0.77	-0.5
355,149	-		GFF2302	0.77	+0.4
355,149	-		GFF2302	0.77	-0.3
355,149	-		GFF2302	0.77	-1.7