Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2245 and GFF2246 are separated by 36 nucleotides GFF2246 and GFF2247 are separated by 10 nucleotides GFF2247 and GFF2248 are separated by 35 nucleotides GFF2248 and GFF2249 are separated by 47 nucleotides GFF2249 and GFF2250 are separated by 512 nucleotides
GFF2245 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 302,644 to 303,219
GFF2245
GFF2246 - cellular communication/signal transduction, at 303,256 to 303,612
GFF2246
GFF2247 - hypothetical protein, at 303,623 to 304,150
GFF2247
GFF2248 - Transcriptional regulatory protein RtcR, at 304,186 to 305,808
GFF2248
GFF2249 - no description, at 305,856 to 305,990
GFF2249
GFF2250 - Putative stomatin/prohibitin-family membrane protease subunit aq_911, at 306,503 to 307,654
GFF2250
Position (kb) 304
305
306 Strain fitness (log2 ratio) -2
-1
0
1
2 at 303.203 kb on - strand at 303.203 kb on - strand at 303.206 kb on + strand at 303.206 kb on + strand at 303.206 kb on + strand at 303.320 kb on + strand, within GFF2246 at 303.320 kb on + strand, within GFF2246 at 303.321 kb on - strand, within GFF2246 at 303.321 kb on - strand, within GFF2246 at 303.326 kb on + strand, within GFF2246 at 303.326 kb on + strand, within GFF2246 at 303.327 kb on - strand, within GFF2246 at 303.716 kb on + strand, within GFF2247 at 303.717 kb on - strand, within GFF2247 at 304.162 kb on + strand at 304.241 kb on + strand at 304.241 kb on + strand at 304.625 kb on + strand, within GFF2248 at 304.748 kb on + strand, within GFF2248 at 304.748 kb on + strand, within GFF2248 at 304.749 kb on - strand, within GFF2248 at 304.749 kb on - strand, within GFF2248 at 304.884 kb on - strand, within GFF2248 at 305.325 kb on - strand, within GFF2248 at 305.489 kb on + strand, within GFF2248 at 305.490 kb on - strand, within GFF2248 at 305.516 kb on + strand, within GFF2248 at 305.534 kb on + strand, within GFF2248 at 305.534 kb on + strand, within GFF2248 at 305.534 kb on + strand, within GFF2248 at 305.546 kb on + strand, within GFF2248 at 305.669 kb on + strand at 305.670 kb on - strand at 305.670 kb on - strand at 305.779 kb on + strand at 305.779 kb on + strand at 305.788 kb on + strand at 305.788 kb on + strand at 305.850 kb on - strand at 305.850 kb on - strand at 305.857 kb on + strand at 305.857 kb on + strand at 305.857 kb on + strand at 305.857 kb on + strand at 305.857 kb on + strand at 305.858 kb on - strand at 305.858 kb on - strand at 305.858 kb on - strand at 305.858 kb on - strand at 305.920 kb on + strand, within GFF2249 at 305.921 kb on - strand, within GFF2249 at 306.052 kb on + strand at 306.053 kb on - strand at 306.053 kb on - strand at 306.579 kb on + strand at 306.579 kb on + strand at 306.579 kb on + strand at 306.579 kb on + strand at 306.580 kb on - strand at 306.630 kb on + strand, within GFF2250 at 306.630 kb on + strand, within GFF2250 at 306.680 kb on + strand, within GFF2250 at 306.680 kb on + strand, within GFF2250 at 306.680 kb on + strand, within GFF2250 at 306.680 kb on + strand, within GFF2250 at 306.723 kb on + strand, within GFF2250
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 303,203 - -1.1 303,203 - -1.5 303,206 + -1.3 303,206 + -1.1 303,206 + +0.3 303,320 + GFF2246 0.18 -1.0 303,320 + GFF2246 0.18 -0.4 303,321 - GFF2246 0.18 +0.2 303,321 - GFF2246 0.18 +0.4 303,326 + GFF2246 0.20 -0.6 303,326 + GFF2246 0.20 -0.7 303,327 - GFF2246 0.20 -1.2 303,716 + GFF2247 0.18 +1.0 303,717 - GFF2247 0.18 -0.5 304,162 + +1.4 304,241 + -0.7 304,241 + -0.9 304,625 + GFF2248 0.27 +0.2 304,748 + GFF2248 0.35 +2.5 304,748 + GFF2248 0.35 -0.5 304,749 - GFF2248 0.35 +1.7 304,749 - GFF2248 0.35 +0.5 304,884 - GFF2248 0.43 +0.1 305,325 - GFF2248 0.70 -0.1 305,489 + GFF2248 0.80 +1.0 305,490 - GFF2248 0.80 +0.5 305,516 + GFF2248 0.82 +0.6 305,534 + GFF2248 0.83 -1.2 305,534 + GFF2248 0.83 +0.3 305,534 + GFF2248 0.83 +0.6 305,546 + GFF2248 0.84 -0.2 305,669 + +0.5 305,670 - +0.2 305,670 - +0.1 305,779 + -0.3 305,779 + -0.3 305,788 + +0.6 305,788 + -0.3 305,850 - +0.7 305,850 - +0.3 305,857 + -0.9 305,857 + -0.1 305,857 + -0.5 305,857 + -0.3 305,857 + +0.3 305,858 - +1.0 305,858 - -1.8 305,858 - -0.5 305,858 - +0.1 305,920 + GFF2249 0.47 -0.2 305,921 - GFF2249 0.48 -1.3 306,052 + -0.0 306,053 - +0.3 306,053 - -0.6 306,579 + -1.9 306,579 + -1.0 306,579 + +1.7 306,579 + +1.7 306,580 - -0.6 306,630 + GFF2250 0.11 -1.2 306,630 + GFF2250 0.11 -0.3 306,680 + GFF2250 0.15 +0.9 306,680 + GFF2250 0.15 +1.4 306,680 + GFF2250 0.15 +1.5 306,680 + GFF2250 0.15 -0.3 306,723 + GFF2250 0.19 -0.3
Or see this region's nucleotide sequence