Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF218 and GFF219 are separated by 122 nucleotides GFF219 and GFF220 overlap by 4 nucleotides GFF220 and GFF221 are separated by 2 nucleotides
GFF218 - hypothetical protein, at 241,454 to 242,956
GFF218
GFF219 - GTP-binding protein TypA/BipA, at 243,079 to 244,917
GFF219
GFF220 - tRNA pseudouridine(55) synthase (EC 5.4.99.25), at 244,914 to 245,879
GFF220
GFF221 - Ribosome-binding factor A, at 245,882 to 246,253
GFF221
Position (kb)
243
244
245 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 242.114 kb on + strand, within GFF218 at 242.114 kb on + strand, within GFF218 at 242.114 kb on + strand, within GFF218 at 242.114 kb on + strand, within GFF218 at 242.114 kb on + strand, within GFF218 at 242.114 kb on + strand, within GFF218 at 242.114 kb on + strand, within GFF218 at 242.115 kb on - strand, within GFF218 at 242.115 kb on - strand, within GFF218 at 242.115 kb on - strand, within GFF218 at 242.115 kb on - strand, within GFF218 at 242.115 kb on - strand, within GFF218 at 242.708 kb on + strand, within GFF218 at 242.709 kb on - strand, within GFF218 at 242.709 kb on - strand, within GFF218 at 242.709 kb on - strand, within GFF218 at 242.954 kb on + strand at 242.955 kb on - strand at 242.955 kb on - strand at 243.204 kb on - strand at 243.286 kb on - strand, within GFF219 at 243.347 kb on + strand, within GFF219 at 243.347 kb on + strand, within GFF219 at 243.347 kb on + strand, within GFF219 at 243.348 kb on - strand, within GFF219 at 243.348 kb on - strand, within GFF219 at 243.407 kb on + strand, within GFF219 at 243.408 kb on - strand, within GFF219 at 243.408 kb on - strand, within GFF219 at 243.485 kb on + strand, within GFF219 at 243.485 kb on + strand, within GFF219 at 243.578 kb on + strand, within GFF219 at 243.579 kb on - strand, within GFF219 at 243.768 kb on - strand, within GFF219 at 244.424 kb on + strand, within GFF219 at 244.425 kb on - strand, within GFF219 at 244.893 kb on + strand at 244.911 kb on + strand at 244.912 kb on - strand at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.458 kb on + strand, within GFF220 at 245.458 kb on + strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.464 kb on + strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.647 kb on + strand, within GFF220 at 245.647 kb on + strand, within GFF220 at 245.648 kb on - strand, within GFF220 at 245.648 kb on - strand, within GFF220 at 245.648 kb on - strand, within GFF220 at 245.648 kb on - strand, within GFF220 at 245.648 kb on - strand, within GFF220 at 245.883 kb on + strand at 245.884 kb on - strand at 245.884 kb on - strand at 245.884 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 242,114 + GFF218 0.44 -0.8 242,114 + GFF218 0.44 -0.8 242,114 + GFF218 0.44 +0.2 242,114 + GFF218 0.44 -2.0 242,114 + GFF218 0.44 +0.4 242,114 + GFF218 0.44 +1.2 242,114 + GFF218 0.44 +0.3 242,115 - GFF218 0.44 -0.6 242,115 - GFF218 0.44 -0.2 242,115 - GFF218 0.44 +0.0 242,115 - GFF218 0.44 -0.1 242,115 - GFF218 0.44 +0.4 242,708 + GFF218 0.83 +0.8 242,709 - GFF218 0.83 -0.6 242,709 - GFF218 0.83 +0.0 242,709 - GFF218 0.83 +0.6 242,954 + -0.3 242,955 - -0.4 242,955 - +0.0 243,204 - +0.5 243,286 - GFF219 0.11 -0.8 243,347 + GFF219 0.15 -0.4 243,347 + GFF219 0.15 -0.1 243,347 + GFF219 0.15 -0.4 243,348 - GFF219 0.15 -2.4 243,348 - GFF219 0.15 +0.6 243,407 + GFF219 0.18 +0.9 243,408 - GFF219 0.18 -0.2 243,408 - GFF219 0.18 -0.4 243,485 + GFF219 0.22 +0.2 243,485 + GFF219 0.22 -1.4 243,578 + GFF219 0.27 -0.8 243,579 - GFF219 0.27 -1.7 243,768 - GFF219 0.37 -0.7 244,424 + GFF219 0.73 -1.3 244,425 - GFF219 0.73 -1.4 244,893 + -1.6 244,911 + +1.9 244,912 - -2.3 245,329 + GFF220 0.43 -2.1 245,329 + GFF220 0.43 +1.6 245,329 + GFF220 0.43 +2.2 245,329 + GFF220 0.43 -0.4 245,329 + GFF220 0.43 +0.4 245,329 + GFF220 0.43 +0.0 245,329 + GFF220 0.43 -0.5 245,329 + GFF220 0.43 -0.7 245,329 + GFF220 0.43 -0.7 245,329 + GFF220 0.43 +0.1 245,329 + GFF220 0.43 +0.8 245,329 + GFF220 0.43 -0.4 245,329 + GFF220 0.43 -1.1 245,329 + GFF220 0.43 -1.6 245,329 + GFF220 0.43 -1.0 245,330 - GFF220 0.43 -0.4 245,330 - GFF220 0.43 -0.6 245,330 - GFF220 0.43 +0.1 245,330 - GFF220 0.43 +0.4 245,330 - GFF220 0.43 -1.1 245,330 - GFF220 0.43 -1.8 245,458 + GFF220 0.56 -2.1 245,458 + GFF220 0.56 -0.7 245,459 - GFF220 0.56 -0.5 245,459 - GFF220 0.56 -0.3 245,459 - GFF220 0.56 -1.3 245,459 - GFF220 0.56 +0.5 245,459 - GFF220 0.56 -0.7 245,459 - GFF220 0.56 -0.2 245,459 - GFF220 0.56 +0.0 245,459 - GFF220 0.56 +0.8 245,464 + GFF220 0.57 -0.4 245,465 - GFF220 0.57 -0.2 245,465 - GFF220 0.57 -0.3 245,465 - GFF220 0.57 -1.7 245,465 - GFF220 0.57 -0.7 245,465 - GFF220 0.57 -0.0 245,465 - GFF220 0.57 -0.7 245,647 + GFF220 0.76 -0.4 245,647 + GFF220 0.76 -0.5 245,648 - GFF220 0.76 +1.7 245,648 - GFF220 0.76 -1.6 245,648 - GFF220 0.76 -0.4 245,648 - GFF220 0.76 -0.6 245,648 - GFF220 0.76 +0.7 245,883 + -1.6 245,884 - -0.7 245,884 - +0.3 245,884 - -1.8
Or see this region's nucleotide sequence