Strain Fitness in Variovorax sp. SCN45 around GFF219

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF218 and GFF219 are separated by 122 nucleotidesGFF219 and GFF220 overlap by 4 nucleotidesGFF220 and GFF221 are separated by 2 nucleotides GFF218 - hypothetical protein, at 241,454 to 242,956 GFF218 GFF219 - GTP-binding protein TypA/BipA, at 243,079 to 244,917 GFF219 GFF220 - tRNA pseudouridine(55) synthase (EC 5.4.99.25), at 244,914 to 245,879 GFF220 GFF221 - Ribosome-binding factor A, at 245,882 to 246,253 GFF221 Position (kb) 243 244 245Strain fitness (log2 ratio) -2 -1 0 1 2at 242.114 kb on + strand, within GFF218at 242.114 kb on + strand, within GFF218at 242.114 kb on + strand, within GFF218at 242.114 kb on + strand, within GFF218at 242.114 kb on + strand, within GFF218at 242.114 kb on + strand, within GFF218at 242.114 kb on + strand, within GFF218at 242.115 kb on - strand, within GFF218at 242.115 kb on - strand, within GFF218at 242.115 kb on - strand, within GFF218at 242.115 kb on - strand, within GFF218at 242.115 kb on - strand, within GFF218at 242.708 kb on + strand, within GFF218at 242.709 kb on - strand, within GFF218at 242.709 kb on - strand, within GFF218at 242.709 kb on - strand, within GFF218at 242.954 kb on + strandat 242.955 kb on - strandat 242.955 kb on - strandat 243.204 kb on - strandat 243.286 kb on - strand, within GFF219at 243.347 kb on + strand, within GFF219at 243.347 kb on + strand, within GFF219at 243.347 kb on + strand, within GFF219at 243.348 kb on - strand, within GFF219at 243.348 kb on - strand, within GFF219at 243.407 kb on + strand, within GFF219at 243.408 kb on - strand, within GFF219at 243.408 kb on - strand, within GFF219at 243.485 kb on + strand, within GFF219at 243.485 kb on + strand, within GFF219at 243.578 kb on + strand, within GFF219at 243.579 kb on - strand, within GFF219at 243.768 kb on - strand, within GFF219at 244.424 kb on + strand, within GFF219at 244.425 kb on - strand, within GFF219at 244.893 kb on + strandat 244.911 kb on + strandat 244.912 kb on - strandat 245.329 kb on + strand, within GFF220at 245.329 kb on + strand, within GFF220at 245.329 kb on + strand, within GFF220at 245.329 kb on + strand, within GFF220at 245.329 kb on + strand, within GFF220at 245.329 kb on + strand, within GFF220at 245.329 kb on + strand, within GFF220at 245.329 kb on + strand, within GFF220at 245.329 kb on + strand, within GFF220at 245.329 kb on + strand, within GFF220at 245.329 kb on + strand, within GFF220at 245.329 kb on + strand, within GFF220at 245.329 kb on + strand, within GFF220at 245.329 kb on + strand, within GFF220at 245.329 kb on + strand, within GFF220at 245.330 kb on - strand, within GFF220at 245.330 kb on - strand, within GFF220at 245.330 kb on - strand, within GFF220at 245.330 kb on - strand, within GFF220at 245.330 kb on - strand, within GFF220at 245.330 kb on - strand, within GFF220at 245.458 kb on + strand, within GFF220at 245.458 kb on + strand, within GFF220at 245.459 kb on - strand, within GFF220at 245.459 kb on - strand, within GFF220at 245.459 kb on - strand, within GFF220at 245.459 kb on - strand, within GFF220at 245.459 kb on - strand, within GFF220at 245.459 kb on - strand, within GFF220at 245.459 kb on - strand, within GFF220at 245.459 kb on - strand, within GFF220at 245.464 kb on + strand, within GFF220at 245.465 kb on - strand, within GFF220at 245.465 kb on - strand, within GFF220at 245.465 kb on - strand, within GFF220at 245.465 kb on - strand, within GFF220at 245.465 kb on - strand, within GFF220at 245.465 kb on - strand, within GFF220at 245.647 kb on + strand, within GFF220at 245.647 kb on + strand, within GFF220at 245.648 kb on - strand, within GFF220at 245.648 kb on - strand, within GFF220at 245.648 kb on - strand, within GFF220at 245.648 kb on - strand, within GFF220at 245.648 kb on - strand, within GFF220at 245.883 kb on + strandat 245.884 kb on - strandat 245.884 kb on - strandat 245.884 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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242,114 + GFF218 0.44 -0.8
242,114 + GFF218 0.44 -0.8
242,114 + GFF218 0.44 +0.2
242,114 + GFF218 0.44 -2.0
242,114 + GFF218 0.44 +0.4
242,114 + GFF218 0.44 +1.2
242,114 + GFF218 0.44 +0.3
242,115 - GFF218 0.44 -0.6
242,115 - GFF218 0.44 -0.2
242,115 - GFF218 0.44 +0.0
242,115 - GFF218 0.44 -0.1
242,115 - GFF218 0.44 +0.4
242,708 + GFF218 0.83 +0.8
242,709 - GFF218 0.83 -0.6
242,709 - GFF218 0.83 +0.0
242,709 - GFF218 0.83 +0.6
242,954 + -0.3
242,955 - -0.4
242,955 - +0.0
243,204 - +0.5
243,286 - GFF219 0.11 -0.8
243,347 + GFF219 0.15 -0.4
243,347 + GFF219 0.15 -0.1
243,347 + GFF219 0.15 -0.4
243,348 - GFF219 0.15 -2.4
243,348 - GFF219 0.15 +0.6
243,407 + GFF219 0.18 +0.9
243,408 - GFF219 0.18 -0.2
243,408 - GFF219 0.18 -0.4
243,485 + GFF219 0.22 +0.2
243,485 + GFF219 0.22 -1.4
243,578 + GFF219 0.27 -0.8
243,579 - GFF219 0.27 -1.7
243,768 - GFF219 0.37 -0.7
244,424 + GFF219 0.73 -1.3
244,425 - GFF219 0.73 -1.4
244,893 + -1.6
244,911 + +1.9
244,912 - -2.3
245,329 + GFF220 0.43 -2.1
245,329 + GFF220 0.43 +1.6
245,329 + GFF220 0.43 +2.2
245,329 + GFF220 0.43 -0.4
245,329 + GFF220 0.43 +0.4
245,329 + GFF220 0.43 +0.0
245,329 + GFF220 0.43 -0.5
245,329 + GFF220 0.43 -0.7
245,329 + GFF220 0.43 -0.7
245,329 + GFF220 0.43 +0.1
245,329 + GFF220 0.43 +0.8
245,329 + GFF220 0.43 -0.4
245,329 + GFF220 0.43 -1.1
245,329 + GFF220 0.43 -1.6
245,329 + GFF220 0.43 -1.0
245,330 - GFF220 0.43 -0.4
245,330 - GFF220 0.43 -0.6
245,330 - GFF220 0.43 +0.1
245,330 - GFF220 0.43 +0.4
245,330 - GFF220 0.43 -1.1
245,330 - GFF220 0.43 -1.8
245,458 + GFF220 0.56 -2.1
245,458 + GFF220 0.56 -0.7
245,459 - GFF220 0.56 -0.5
245,459 - GFF220 0.56 -0.3
245,459 - GFF220 0.56 -1.3
245,459 - GFF220 0.56 +0.5
245,459 - GFF220 0.56 -0.7
245,459 - GFF220 0.56 -0.2
245,459 - GFF220 0.56 +0.0
245,459 - GFF220 0.56 +0.8
245,464 + GFF220 0.57 -0.4
245,465 - GFF220 0.57 -0.2
245,465 - GFF220 0.57 -0.3
245,465 - GFF220 0.57 -1.7
245,465 - GFF220 0.57 -0.7
245,465 - GFF220 0.57 -0.0
245,465 - GFF220 0.57 -0.7
245,647 + GFF220 0.76 -0.4
245,647 + GFF220 0.76 -0.5
245,648 - GFF220 0.76 +1.7
245,648 - GFF220 0.76 -1.6
245,648 - GFF220 0.76 -0.4
245,648 - GFF220 0.76 -0.6
245,648 - GFF220 0.76 +0.7
245,883 + -1.6
245,884 - -0.7
245,884 - +0.3
245,884 - -1.8

Or see this region's nucleotide sequence