Strain Fitness in Variovorax sp. SCN45 around GFF2186

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2184 and GFF2185 are separated by 25 nucleotidesGFF2185 and GFF2186 are separated by 34 nucleotidesGFF2186 and GFF2187 are separated by 4 nucleotides GFF2184 - VWA containing CoxE family protein, at 241,546 to 242,733 GFF2184 GFF2185 - Acetyltransferase, GNAT family, at 242,759 to 243,346 GFF2185 GFF2186 - no description, at 243,381 to 243,626 GFF2186 GFF2187 - ATPase associated with various cellular activities, AAA_5, at 243,631 to 244,485 GFF2187 Position (kb) 243 244Strain fitness (log2 ratio) -2 -1 0 1at 242.522 kb on + strand, within GFF2184at 242.552 kb on + strand, within GFF2184at 242.552 kb on + strand, within GFF2184at 242.553 kb on - strand, within GFF2184at 242.553 kb on - strand, within GFF2184at 242.553 kb on - strand, within GFF2184at 242.591 kb on + strand, within GFF2184at 242.591 kb on + strand, within GFF2184at 242.591 kb on + strand, within GFF2184at 242.592 kb on - strand, within GFF2184at 242.592 kb on - strand, within GFF2184at 242.592 kb on - strand, within GFF2184at 242.594 kb on + strand, within GFF2184at 242.594 kb on + strand, within GFF2184at 242.594 kb on + strand, within GFF2184at 242.594 kb on + strand, within GFF2184at 242.594 kb on + strand, within GFF2184at 242.595 kb on - strand, within GFF2184at 242.595 kb on - strand, within GFF2184at 242.595 kb on - strand, within GFF2184at 242.595 kb on - strand, within GFF2184at 242.595 kb on - strand, within GFF2184at 242.672 kb on + strandat 242.672 kb on + strandat 242.672 kb on + strandat 242.673 kb on - strandat 242.673 kb on - strandat 242.673 kb on - strandat 242.673 kb on - strandat 242.714 kb on + strandat 242.715 kb on - strandat 242.785 kb on - strandat 242.785 kb on - strandat 242.832 kb on + strand, within GFF2185at 242.832 kb on + strand, within GFF2185at 242.833 kb on - strand, within GFF2185at 243.051 kb on + strand, within GFF2185at 243.051 kb on + strand, within GFF2185at 243.051 kb on + strand, within GFF2185at 243.051 kb on + strand, within GFF2185at 243.052 kb on - strand, within GFF2185at 243.190 kb on - strand, within GFF2185at 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.374 kb on - strandat 243.400 kb on + strandat 243.413 kb on - strand, within GFF2186at 243.413 kb on - strand, within GFF2186at 243.413 kb on - strand, within GFF2186at 243.490 kb on + strand, within GFF2186at 243.491 kb on - strand, within GFF2186at 243.848 kb on + strand, within GFF2187at 243.848 kb on + strand, within GFF2187at 243.849 kb on - strand, within GFF2187at 243.947 kb on + strand, within GFF2187at 243.947 kb on + strand, within GFF2187at 244.055 kb on + strand, within GFF2187at 244.055 kb on + strand, within GFF2187at 244.055 kb on + strand, within GFF2187at 244.055 kb on + strand, within GFF2187at 244.056 kb on - strand, within GFF2187at 244.056 kb on - strand, within GFF2187at 244.061 kb on + strand, within GFF2187at 244.061 kb on + strand, within GFF2187at 244.061 kb on + strand, within GFF2187at 244.061 kb on + strand, within GFF2187at 244.061 kb on + strand, within GFF2187at 244.062 kb on - strand, within GFF2187at 244.062 kb on - strand, within GFF2187at 244.062 kb on - strand, within GFF2187at 244.062 kb on - strand, within GFF2187at 244.062 kb on - strand, within GFF2187at 244.106 kb on + strand, within GFF2187at 244.193 kb on + strand, within GFF2187at 244.193 kb on + strand, within GFF2187at 244.193 kb on + strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.271 kb on + strand, within GFF2187at 244.271 kb on + strand, within GFF2187at 244.271 kb on + strand, within GFF2187at 244.272 kb on - strand, within GFF2187at 244.272 kb on - strand, within GFF2187at 244.272 kb on - strand, within GFF2187at 244.277 kb on + strand, within GFF2187at 244.277 kb on + strand, within GFF2187at 244.277 kb on + strand, within GFF2187at 244.278 kb on - strand, within GFF2187at 244.278 kb on - strand, within GFF2187at 244.278 kb on - strand, within GFF2187at 244.278 kb on - strand, within GFF2187at 244.460 kb on + strandat 244.460 kb on + strandat 244.460 kb on + strandat 244.460 kb on + strandat 244.460 kb on + strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.592 kb on - strandat 244.592 kb on - strandat 244.592 kb on - strandat 244.592 kb on - strandat 244.592 kb on - strandat 244.592 kb on - strandat 244.592 kb on - strandat 244.592 kb on - strandat 244.593 kb on + strandat 244.593 kb on + strandat 244.593 kb on + strandat 244.593 kb on + strandat 244.593 kb on + strandat 244.594 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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242,522 + GFF2184 0.82 -0.4
242,552 + GFF2184 0.85 -0.9
242,552 + GFF2184 0.85 +0.7
242,553 - GFF2184 0.85 -0.7
242,553 - GFF2184 0.85 -0.2
242,553 - GFF2184 0.85 -0.8
242,591 + GFF2184 0.88 +0.9
242,591 + GFF2184 0.88 -0.2
242,591 + GFF2184 0.88 -0.1
242,592 - GFF2184 0.88 -0.5
242,592 - GFF2184 0.88 +0.7
242,592 - GFF2184 0.88 -1.1
242,594 + GFF2184 0.88 -0.4
242,594 + GFF2184 0.88 -2.3
242,594 + GFF2184 0.88 -0.5
242,594 + GFF2184 0.88 +0.5
242,594 + GFF2184 0.88 -1.3
242,595 - GFF2184 0.88 -0.0
242,595 - GFF2184 0.88 +0.9
242,595 - GFF2184 0.88 -0.4
242,595 - GFF2184 0.88 +0.5
242,595 - GFF2184 0.88 +0.1
242,672 + +1.2
242,672 + +1.3
242,672 + +0.8
242,673 - +0.5
242,673 - -0.2
242,673 - -0.4
242,673 - -0.8
242,714 + -0.0
242,715 - +0.5
242,785 - +0.3
242,785 - -0.3
242,832 + GFF2185 0.12 -0.6
242,832 + GFF2185 0.12 +0.1
242,833 - GFF2185 0.13 -0.4
243,051 + GFF2185 0.50 +0.2
243,051 + GFF2185 0.50 -0.3
243,051 + GFF2185 0.50 -0.0
243,051 + GFF2185 0.50 -0.9
243,052 - GFF2185 0.50 +1.0
243,190 - GFF2185 0.73 +0.1
243,373 + +1.1
243,373 + -0.5
243,373 + +0.7
243,373 + +0.2
243,373 + -0.4
243,373 + +0.4
243,373 + -0.7
243,373 + +0.3
243,373 + -0.5
243,373 + -0.0
243,373 + -0.6
243,374 - +0.7
243,400 + -0.2
243,413 - GFF2186 0.13 -0.1
243,413 - GFF2186 0.13 -0.8
243,413 - GFF2186 0.13 -0.7
243,490 + GFF2186 0.44 -1.3
243,491 - GFF2186 0.45 -0.7
243,848 + GFF2187 0.25 +0.7
243,848 + GFF2187 0.25 -0.9
243,849 - GFF2187 0.25 -1.1
243,947 + GFF2187 0.37 +0.7
243,947 + GFF2187 0.37 -0.1
244,055 + GFF2187 0.50 -0.1
244,055 + GFF2187 0.50 +0.1
244,055 + GFF2187 0.50 +0.1
244,055 + GFF2187 0.50 -0.4
244,056 - GFF2187 0.50 +0.5
244,056 - GFF2187 0.50 +0.2
244,061 + GFF2187 0.50 +0.4
244,061 + GFF2187 0.50 -0.2
244,061 + GFF2187 0.50 -0.2
244,061 + GFF2187 0.50 -0.5
244,061 + GFF2187 0.50 -0.2
244,062 - GFF2187 0.50 -1.4
244,062 - GFF2187 0.50 +0.6
244,062 - GFF2187 0.50 -0.2
244,062 - GFF2187 0.50 -0.6
244,062 - GFF2187 0.50 -0.0
244,106 + GFF2187 0.56 -1.1
244,193 + GFF2187 0.66 -0.4
244,193 + GFF2187 0.66 +0.3
244,193 + GFF2187 0.66 +0.2
244,194 - GFF2187 0.66 +1.3
244,194 - GFF2187 0.66 +1.1
244,194 - GFF2187 0.66 -0.2
244,194 - GFF2187 0.66 -0.4
244,194 - GFF2187 0.66 -1.7
244,194 - GFF2187 0.66 -0.5
244,194 - GFF2187 0.66 +0.3
244,194 - GFF2187 0.66 -0.7
244,194 - GFF2187 0.66 +0.5
244,194 - GFF2187 0.66 -0.7
244,271 + GFF2187 0.75 -0.5
244,271 + GFF2187 0.75 +0.1
244,271 + GFF2187 0.75 +1.2
244,272 - GFF2187 0.75 -0.2
244,272 - GFF2187 0.75 +0.2
244,272 - GFF2187 0.75 +0.7
244,277 + GFF2187 0.76 -0.7
244,277 + GFF2187 0.76 -1.6
244,277 + GFF2187 0.76 -0.3
244,278 - GFF2187 0.76 -0.3
244,278 - GFF2187 0.76 -0.7
244,278 - GFF2187 0.76 -0.7
244,278 - GFF2187 0.76 -0.5
244,460 + +0.3
244,460 + +0.0
244,460 + +1.7
244,460 + +0.4
244,460 + +0.1
244,461 - -0.6
244,461 - +0.6
244,461 - +1.1
244,461 - +0.2
244,461 - +0.2
244,461 - +0.2
244,461 - -0.5
244,461 - +0.3
244,461 - -0.1
244,591 + -0.1
244,591 + -0.5
244,591 + +0.2
244,591 + -0.0
244,591 + +0.1
244,591 + -1.3
244,591 + -0.0
244,591 + +0.0
244,591 + -0.6
244,592 - +0.7
244,592 - +0.5
244,592 - -0.3
244,592 - -0.2
244,592 - -0.3
244,592 - +0.4
244,592 - +0.3
244,592 - +0.5
244,593 + +1.1
244,593 + +0.5
244,593 + -0.2
244,593 + +0.0
244,593 + -0.1
244,594 - -0.5

Or see this region's nucleotide sequence