Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2178 and GFF2179 are separated by 299 nucleotides GFF2179 and GFF2180 overlap by 7 nucleotides GFF2180 and GFF2181 are separated by 18 nucleotides
GFF2178 - Methyl-accepting chemotaxis sensor/transducer protein, at 231,656 to 233,323
GFF2178
GFF2179 - hypothetical protein, at 233,623 to 234,042
GFF2179
GFF2180 - hypothetical protein, at 234,036 to 234,383
GFF2180
GFF2181 - no description, at 234,402 to 234,650
GFF2181
Position (kb) 233
234
235 Strain fitness (log2 ratio) -2
-1
0
1
2 at 232.857 kb on + strand, within GFF2178 at 232.857 kb on + strand, within GFF2178 at 232.858 kb on - strand, within GFF2178 at 232.858 kb on - strand, within GFF2178 at 233.016 kb on + strand, within GFF2178 at 233.016 kb on + strand, within GFF2178 at 233.016 kb on + strand, within GFF2178 at 233.017 kb on - strand, within GFF2178 at 233.017 kb on - strand, within GFF2178 at 233.017 kb on - strand, within GFF2178 at 233.017 kb on - strand, within GFF2178 at 233.017 kb on - strand, within GFF2178 at 233.094 kb on + strand, within GFF2178 at 233.094 kb on + strand, within GFF2178 at 233.094 kb on + strand, within GFF2178 at 233.095 kb on - strand, within GFF2178 at 233.095 kb on - strand, within GFF2178 at 233.392 kb on + strand at 233.392 kb on + strand at 233.392 kb on + strand at 233.393 kb on - strand at 233.393 kb on - strand at 233.396 kb on + strand at 233.396 kb on + strand at 233.396 kb on + strand at 233.396 kb on + strand at 233.397 kb on - strand at 233.529 kb on + strand at 233.556 kb on + strand at 233.556 kb on + strand at 233.557 kb on - strand at 233.557 kb on - strand at 233.557 kb on - strand at 233.557 kb on - strand at 233.666 kb on - strand, within GFF2179 at 233.695 kb on + strand, within GFF2179 at 233.695 kb on + strand, within GFF2179 at 234.004 kb on + strand at 234.004 kb on + strand at 234.004 kb on + strand at 234.004 kb on + strand at 234.005 kb on - strand at 234.005 kb on - strand at 234.005 kb on - strand at 234.005 kb on - strand at 234.123 kb on + strand, within GFF2180 at 234.123 kb on + strand, within GFF2180 at 234.123 kb on + strand, within GFF2180 at 234.124 kb on - strand, within GFF2180 at 234.124 kb on - strand, within GFF2180 at 234.124 kb on - strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.339 kb on + strand, within GFF2180 at 234.339 kb on + strand, within GFF2180 at 234.340 kb on - strand, within GFF2180 at 234.340 kb on - strand, within GFF2180 at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.370 kb on - strand at 234.370 kb on - strand at 234.370 kb on - strand at 234.404 kb on - strand at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.550 kb on + strand, within GFF2181 at 234.550 kb on + strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.612 kb on + strand, within GFF2181 at 234.613 kb on - strand, within GFF2181 at 234.613 kb on - strand, within GFF2181 at 234.613 kb on - strand, within GFF2181 at 234.633 kb on + strand at 234.633 kb on + strand at 234.633 kb on + strand at 234.633 kb on + strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.636 kb on - strand at 234.636 kb on - strand at 234.636 kb on - strand at 234.864 kb on + strand at 234.865 kb on - strand at 234.869 kb on + strand at 234.869 kb on + strand at 234.870 kb on - strand at 234.870 kb on - strand at 234.910 kb on + strand at 234.910 kb on + strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.930 kb on + strand at 234.930 kb on + strand at 234.930 kb on + strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.976 kb on + strand at 234.982 kb on - strand at 235.002 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 232,857 + GFF2178 0.72 -0.0 232,857 + GFF2178 0.72 +0.2 232,858 - GFF2178 0.72 +1.0 232,858 - GFF2178 0.72 -0.2 233,016 + GFF2178 0.82 -0.4 233,016 + GFF2178 0.82 -1.0 233,016 + GFF2178 0.82 -1.4 233,017 - GFF2178 0.82 +0.4 233,017 - GFF2178 0.82 +0.7 233,017 - GFF2178 0.82 -0.6 233,017 - GFF2178 0.82 +0.7 233,017 - GFF2178 0.82 -0.6 233,094 + GFF2178 0.86 -1.4 233,094 + GFF2178 0.86 +0.4 233,094 + GFF2178 0.86 +1.7 233,095 - GFF2178 0.86 -0.3 233,095 - GFF2178 0.86 +0.8 233,392 + -0.4 233,392 + +0.1 233,392 + -0.8 233,393 - +0.1 233,393 - -0.2 233,396 + -0.8 233,396 + -0.7 233,396 + -0.5 233,396 + -2.0 233,397 - -1.2 233,529 + -0.2 233,556 + +0.2 233,556 + +0.3 233,557 - -1.2 233,557 - -0.5 233,557 - +0.6 233,557 - +0.5 233,666 - GFF2179 0.10 -0.9 233,695 + GFF2179 0.17 -0.4 233,695 + GFF2179 0.17 -1.0 234,004 + +0.4 234,004 + +0.0 234,004 + +0.9 234,004 + -0.1 234,005 - -0.2 234,005 - +0.1 234,005 - +0.1 234,005 - -0.6 234,123 + GFF2180 0.25 +0.5 234,123 + GFF2180 0.25 -1.5 234,123 + GFF2180 0.25 -0.4 234,124 - GFF2180 0.25 -0.7 234,124 - GFF2180 0.25 +0.2 234,124 - GFF2180 0.25 -0.2 234,313 + GFF2180 0.80 -1.9 234,313 + GFF2180 0.80 -2.3 234,313 + GFF2180 0.80 +0.7 234,313 + GFF2180 0.80 -1.8 234,313 + GFF2180 0.80 +1.4 234,314 - GFF2180 0.80 -0.7 234,314 - GFF2180 0.80 -0.0 234,314 - GFF2180 0.80 -2.7 234,314 - GFF2180 0.80 +0.6 234,314 - GFF2180 0.80 -0.1 234,339 + GFF2180 0.87 +1.5 234,339 + GFF2180 0.87 +0.1 234,340 - GFF2180 0.87 -0.1 234,340 - GFF2180 0.87 -0.1 234,369 + -0.0 234,369 + -0.1 234,369 + -0.0 234,369 + +0.2 234,369 + -0.9 234,369 + -0.5 234,369 + -0.6 234,370 - +0.0 234,370 - +0.1 234,370 - -0.0 234,404 - +0.2 234,535 + GFF2181 0.53 +0.2 234,535 + GFF2181 0.53 +0.9 234,535 + GFF2181 0.53 -0.3 234,535 + GFF2181 0.53 +0.7 234,535 + GFF2181 0.53 -0.4 234,535 + GFF2181 0.53 -0.2 234,536 - GFF2181 0.54 +0.2 234,536 - GFF2181 0.54 -0.5 234,536 - GFF2181 0.54 +0.1 234,536 - GFF2181 0.54 -0.0 234,536 - GFF2181 0.54 -0.5 234,550 + GFF2181 0.59 +0.3 234,550 + GFF2181 0.59 -0.8 234,551 - GFF2181 0.60 +0.5 234,551 - GFF2181 0.60 +0.2 234,551 - GFF2181 0.60 +1.2 234,551 - GFF2181 0.60 +0.5 234,612 + GFF2181 0.84 +1.1 234,613 - GFF2181 0.85 +0.4 234,613 - GFF2181 0.85 +0.7 234,613 - GFF2181 0.85 +0.4 234,633 + -0.2 234,633 + -0.2 234,633 + -0.3 234,633 + -2.4 234,634 - -0.2 234,634 - -0.2 234,634 - +2.2 234,634 - -0.8 234,634 - +2.7 234,634 - +0.5 234,636 - +0.4 234,636 - -0.0 234,636 - -0.2 234,864 + +1.2 234,865 - -0.2 234,869 + -1.5 234,869 + +0.1 234,870 - -0.4 234,870 - -0.0 234,910 + -0.7 234,910 + -1.4 234,911 - -0.4 234,911 - -0.6 234,911 - -1.1 234,911 - -0.1 234,930 + -1.7 234,930 + -0.6 234,930 + +0.7 234,931 - -0.0 234,931 - -1.1 234,931 - +0.6 234,931 - +1.7 234,931 - -0.6 234,931 - -0.1 234,976 + -0.6 234,982 - +0.5 235,002 + +0.0
Or see this region's nucleotide sequence