Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2103 and GFF2104 are separated by 138 nucleotides GFF2104 and GFF2105 are separated by 32 nucleotides
GFF2103 - Regulatory protein, LuxR:Tetratricopeptide TPR_4, at 151,668 to 154,355
GFF2103
GFF2104 - 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35), at 154,494 to 155,276
GFF2104
GFF2105 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 155,309 to 156,487
GFF2105
Position (kb) 154
155
156 Strain fitness (log2 ratio) -1
0
1
2 at 153.598 kb on + strand, within GFF2103 at 153.598 kb on + strand, within GFF2103 at 153.599 kb on - strand, within GFF2103 at 154.472 kb on + strand at 154.473 kb on - strand at 154.473 kb on - strand at 154.473 kb on - strand at 154.989 kb on + strand, within GFF2104 at 154.989 kb on + strand, within GFF2104 at 154.990 kb on - strand, within GFF2104 at 155.184 kb on + strand, within GFF2104 at 155.220 kb on + strand at 155.221 kb on - strand at 155.723 kb on + strand, within GFF2105 at 155.723 kb on + strand, within GFF2105 at 155.723 kb on + strand, within GFF2105 at 155.804 kb on + strand, within GFF2105 at 155.834 kb on + strand, within GFF2105 at 155.834 kb on + strand, within GFF2105 at 155.835 kb on - strand, within GFF2105 at 155.901 kb on + strand, within GFF2105 at 155.902 kb on - strand, within GFF2105 at 156.245 kb on + strand, within GFF2105 at 156.245 kb on + strand, within GFF2105 at 156.246 kb on - strand, within GFF2105 at 156.246 kb on - strand, within GFF2105 at 156.246 kb on - strand, within GFF2105 at 156.246 kb on - strand, within GFF2105
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 153,598 + GFF2103 0.72 +1.8 153,598 + GFF2103 0.72 -0.5 153,599 - GFF2103 0.72 -0.2 154,472 + +0.2 154,473 - -0.7 154,473 - -0.7 154,473 - +0.5 154,989 + GFF2104 0.63 +0.5 154,989 + GFF2104 0.63 +0.4 154,990 - GFF2104 0.63 +2.1 155,184 + GFF2104 0.88 -0.8 155,220 + -0.0 155,221 - +0.5 155,723 + GFF2105 0.35 +1.8 155,723 + GFF2105 0.35 -0.4 155,723 + GFF2105 0.35 +0.4 155,804 + GFF2105 0.42 -1.0 155,834 + GFF2105 0.45 +0.0 155,834 + GFF2105 0.45 +0.1 155,835 - GFF2105 0.45 -0.4 155,901 + GFF2105 0.50 +0.4 155,902 - GFF2105 0.50 -0.5 156,245 + GFF2105 0.79 -0.1 156,245 + GFF2105 0.79 -0.3 156,246 - GFF2105 0.79 -1.1 156,246 - GFF2105 0.79 +1.1 156,246 - GFF2105 0.79 -0.9 156,246 - GFF2105 0.79 -1.3
Or see this region's nucleotide sequence