Strain Fitness in Variovorax sp. SCN45 around GFF21

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF19 and GFF20 are separated by 33 nucleotidesGFF20 and GFF21 overlap by 4 nucleotidesGFF21 and GFF22 overlap by 4 nucleotides GFF19 - FIG01219766: hypothetical protein, at 21,326 to 21,712 GFF19 GFF20 - hypothetical protein, at 21,746 to 22,498 GFF20 GFF21 - no description, at 22,495 to 23,631 GFF21 GFF22 - hypothetical protein, at 23,628 to 26,267 GFF22 Position (kb) 22 23 24Strain fitness (log2 ratio) -1 0 1at 21.994 kb on - strand, within GFF20at 22.200 kb on + strand, within GFF20at 22.201 kb on - strand, within GFF20at 22.755 kb on - strand, within GFF21at 22.755 kb on - strand, within GFF21at 23.681 kb on - strandat 23.841 kb on + strandat 23.841 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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21,994 - GFF20 0.33 -0.2
22,200 + GFF20 0.60 -1.0
22,201 - GFF20 0.60 +0.2
22,755 - GFF21 0.23 -0.9
22,755 - GFF21 0.23 -0.1
23,681 - -0.2
23,841 + +0.1
23,841 + -0.3

Or see this region's nucleotide sequence