Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2095 and GFF2096 are separated by 10 nucleotides GFF2096 and GFF2097 are separated by 86 nucleotides
GFF2095 - Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.8.8), at 142,870 to 144,066
GFF2095
GFF2096 - Acyl-CoA dehydrogenase family protein, at 144,077 to 145,228
GFF2096
GFF2097 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 145,315 to 146,427
GFF2097
Position (kb) 144
145
146 Strain fitness (log2 ratio) -2
-1
0
1
2 at 143.098 kb on + strand, within GFF2095 at 143.098 kb on + strand, within GFF2095 at 143.098 kb on + strand, within GFF2095 at 143.099 kb on - strand, within GFF2095 at 143.099 kb on - strand, within GFF2095 at 143.242 kb on + strand, within GFF2095 at 143.242 kb on + strand, within GFF2095 at 143.242 kb on + strand, within GFF2095 at 143.243 kb on - strand, within GFF2095 at 143.243 kb on - strand, within GFF2095 at 143.257 kb on + strand, within GFF2095 at 143.258 kb on - strand, within GFF2095 at 143.326 kb on + strand, within GFF2095 at 143.327 kb on - strand, within GFF2095 at 143.327 kb on - strand, within GFF2095 at 143.327 kb on - strand, within GFF2095 at 143.368 kb on + strand, within GFF2095 at 143.369 kb on - strand, within GFF2095 at 143.590 kb on + strand, within GFF2095 at 143.590 kb on + strand, within GFF2095 at 143.590 kb on + strand, within GFF2095 at 143.590 kb on + strand, within GFF2095 at 143.590 kb on + strand, within GFF2095 at 143.591 kb on - strand, within GFF2095 at 143.591 kb on - strand, within GFF2095 at 143.896 kb on + strand, within GFF2095 at 143.896 kb on + strand, within GFF2095 at 144.007 kb on + strand at 144.007 kb on + strand at 144.007 kb on + strand at 144.007 kb on + strand at 144.007 kb on + strand at 144.347 kb on + strand, within GFF2096 at 144.347 kb on + strand, within GFF2096 at 144.869 kb on + strand, within GFF2096 at 145.139 kb on + strand at 145.139 kb on + strand at 145.139 kb on + strand at 145.338 kb on - strand at 145.338 kb on - strand at 145.699 kb on + strand, within GFF2097 at 145.699 kb on + strand, within GFF2097 at 145.699 kb on + strand, within GFF2097 at 145.700 kb on - strand, within GFF2097 at 145.700 kb on - strand, within GFF2097 at 145.700 kb on - strand, within GFF2097 at 145.769 kb on - strand, within GFF2097 at 145.769 kb on - strand, within GFF2097 at 145.769 kb on - strand, within GFF2097 at 145.769 kb on - strand, within GFF2097 at 145.909 kb on + strand, within GFF2097 at 145.909 kb on + strand, within GFF2097 at 145.909 kb on + strand, within GFF2097 at 145.909 kb on + strand, within GFF2097 at 145.909 kb on + strand, within GFF2097 at 145.909 kb on + strand, within GFF2097 at 145.910 kb on - strand, within GFF2097 at 145.910 kb on - strand, within GFF2097 at 145.910 kb on - strand, within GFF2097 at 145.910 kb on - strand, within GFF2097 at 145.981 kb on + strand, within GFF2097 at 145.981 kb on + strand, within GFF2097 at 145.990 kb on + strand, within GFF2097 at 145.990 kb on + strand, within GFF2097 at 145.990 kb on + strand, within GFF2097 at 145.990 kb on + strand, within GFF2097 at 145.990 kb on + strand, within GFF2097 at 145.991 kb on - strand, within GFF2097 at 145.991 kb on - strand, within GFF2097
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 143,098 + GFF2095 0.19 -1.2 143,098 + GFF2095 0.19 +1.2 143,098 + GFF2095 0.19 -0.4 143,099 - GFF2095 0.19 -2.1 143,099 - GFF2095 0.19 -0.6 143,242 + GFF2095 0.31 -1.0 143,242 + GFF2095 0.31 -2.6 143,242 + GFF2095 0.31 -0.4 143,243 - GFF2095 0.31 -0.5 143,243 - GFF2095 0.31 -0.1 143,257 + GFF2095 0.32 -0.2 143,258 - GFF2095 0.32 -0.2 143,326 + GFF2095 0.38 -0.1 143,327 - GFF2095 0.38 +0.3 143,327 - GFF2095 0.38 -0.1 143,327 - GFF2095 0.38 +1.0 143,368 + GFF2095 0.42 +0.1 143,369 - GFF2095 0.42 +0.6 143,590 + GFF2095 0.60 -0.5 143,590 + GFF2095 0.60 +2.3 143,590 + GFF2095 0.60 -0.7 143,590 + GFF2095 0.60 +0.1 143,590 + GFF2095 0.60 -0.3 143,591 - GFF2095 0.60 -0.7 143,591 - GFF2095 0.60 +0.1 143,896 + GFF2095 0.86 +0.4 143,896 + GFF2095 0.86 -0.5 144,007 + -0.5 144,007 + +0.9 144,007 + -0.2 144,007 + +0.0 144,007 + -0.0 144,347 + GFF2096 0.23 +1.2 144,347 + GFF2096 0.23 +0.2 144,869 + GFF2096 0.69 +0.4 145,139 + -0.0 145,139 + -0.1 145,139 + -0.1 145,338 - -0.4 145,338 - -0.0 145,699 + GFF2097 0.35 -0.2 145,699 + GFF2097 0.35 -0.2 145,699 + GFF2097 0.35 -0.3 145,700 - GFF2097 0.35 -0.6 145,700 - GFF2097 0.35 -0.3 145,700 - GFF2097 0.35 -0.5 145,769 - GFF2097 0.41 -0.1 145,769 - GFF2097 0.41 -0.7 145,769 - GFF2097 0.41 -0.8 145,769 - GFF2097 0.41 -0.1 145,909 + GFF2097 0.53 +0.8 145,909 + GFF2097 0.53 -0.5 145,909 + GFF2097 0.53 -0.1 145,909 + GFF2097 0.53 -0.6 145,909 + GFF2097 0.53 +0.1 145,909 + GFF2097 0.53 -0.6 145,910 - GFF2097 0.53 -0.8 145,910 - GFF2097 0.53 -0.1 145,910 - GFF2097 0.53 -0.6 145,910 - GFF2097 0.53 -0.7 145,981 + GFF2097 0.60 -0.4 145,981 + GFF2097 0.60 +0.0 145,990 + GFF2097 0.61 +0.5 145,990 + GFF2097 0.61 -0.5 145,990 + GFF2097 0.61 -0.6 145,990 + GFF2097 0.61 +0.1 145,990 + GFF2097 0.61 +0.1 145,991 - GFF2097 0.61 +0.6 145,991 - GFF2097 0.61 -0.8
Or see this region's nucleotide sequence