Strain Fitness in Variovorax sp. SCN45 around GFF2086
Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Community=Locust bean gum; Passage=1 |
---|---|---|---|---|---|
remove | |||||
132,639 | + | GFF2084 | 0.71 | -0.8 | |
132,640 | - | GFF2084 | 0.71 | +0.2 | |
132,670 | - | GFF2084 | 0.74 | -0.2 | |
132,670 | - | GFF2084 | 0.74 | -1.6 | |
132,670 | - | GFF2084 | 0.74 | -0.0 | |
133,367 | + | GFF2085 | 0.63 | -0.4 | |
133,367 | + | GFF2085 | 0.63 | -1.2 | |
133,367 | + | GFF2085 | 0.63 | -0.8 | |
133,466 | + | GFF2085 | 0.76 | -0.8 | |
133,466 | + | GFF2085 | 0.76 | +0.7 | |
133,467 | - | GFF2085 | 0.76 | -1.0 | |
133,891 | + | GFF2086 | 0.57 | -2.6 | |
133,891 | + | GFF2086 | 0.57 | -0.6 | |
133,892 | - | GFF2086 | 0.57 | +0.4 | |
134,642 | + | GFF2087 | 0.42 | -0.5 | |
134,642 | + | GFF2087 | 0.42 | -0.5 | |
134,642 | + | GFF2087 | 0.42 | -0.9 | |
134,642 | + | GFF2087 | 0.42 | -0.7 | |
134,643 | - | GFF2087 | 0.42 | -1.1 | |
134,747 | + | GFF2087 | 0.50 | -1.1 | |
134,748 | - | GFF2087 | 0.50 | +0.4 | |
134,785 | - | GFF2087 | 0.53 | -0.2 | |
135,006 | + | GFF2087 | 0.69 | +0.8 | |
135,006 | + | GFF2087 | 0.69 | +0.6 | |
135,007 | - | GFF2087 | 0.69 | -0.1 |
Or see this region's nucleotide sequence