Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2084 and GFF2085 overlap by 4 nucleotides GFF2085 and GFF2086 overlap by 4 nucleotides GFF2086 and GFF2087 overlap by 11 nucleotides
GFF2084 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 131,960 to 132,913
GFF2084
GFF2085 - Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 132,910 to 133,638
GFF2085
GFF2086 - hypothetical protein, at 133,635 to 134,084
GFF2086
GFF2087 - Ser/Thr and Tyr protein phosphatase (dual specificity), at 134,074 to 135,423
GFF2087
Position (kb) 133
134
135 Strain fitness (log2 ratio) -2
-1
0
1 at 132.639 kb on + strand, within GFF2084 at 132.640 kb on - strand, within GFF2084 at 132.670 kb on - strand, within GFF2084 at 132.670 kb on - strand, within GFF2084 at 132.670 kb on - strand, within GFF2084 at 133.367 kb on + strand, within GFF2085 at 133.367 kb on + strand, within GFF2085 at 133.367 kb on + strand, within GFF2085 at 133.466 kb on + strand, within GFF2085 at 133.466 kb on + strand, within GFF2085 at 133.467 kb on - strand, within GFF2085 at 133.891 kb on + strand, within GFF2086 at 133.891 kb on + strand, within GFF2086 at 133.892 kb on - strand, within GFF2086 at 134.642 kb on + strand, within GFF2087 at 134.642 kb on + strand, within GFF2087 at 134.642 kb on + strand, within GFF2087 at 134.642 kb on + strand, within GFF2087 at 134.643 kb on - strand, within GFF2087 at 134.747 kb on + strand, within GFF2087 at 134.748 kb on - strand, within GFF2087 at 134.785 kb on - strand, within GFF2087 at 135.006 kb on + strand, within GFF2087 at 135.006 kb on + strand, within GFF2087 at 135.007 kb on - strand, within GFF2087
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 132,639 + GFF2084 0.71 -0.8 132,640 - GFF2084 0.71 +0.2 132,670 - GFF2084 0.74 -0.2 132,670 - GFF2084 0.74 -1.6 132,670 - GFF2084 0.74 -0.0 133,367 + GFF2085 0.63 -0.4 133,367 + GFF2085 0.63 -1.2 133,367 + GFF2085 0.63 -0.8 133,466 + GFF2085 0.76 -0.8 133,466 + GFF2085 0.76 +0.7 133,467 - GFF2085 0.76 -1.0 133,891 + GFF2086 0.57 -2.6 133,891 + GFF2086 0.57 -0.6 133,892 - GFF2086 0.57 +0.4 134,642 + GFF2087 0.42 -0.5 134,642 + GFF2087 0.42 -0.5 134,642 + GFF2087 0.42 -0.9 134,642 + GFF2087 0.42 -0.7 134,643 - GFF2087 0.42 -1.1 134,747 + GFF2087 0.50 -1.1 134,748 - GFF2087 0.50 +0.4 134,785 - GFF2087 0.53 -0.2 135,006 + GFF2087 0.69 +0.8 135,006 + GFF2087 0.69 +0.6 135,007 - GFF2087 0.69 -0.1
Or see this region's nucleotide sequence