Strain Fitness in Variovorax sp. SCN45 around GFF2086

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2084 and GFF2085 overlap by 4 nucleotidesGFF2085 and GFF2086 overlap by 4 nucleotidesGFF2086 and GFF2087 overlap by 11 nucleotides GFF2084 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 131,960 to 132,913 GFF2084 GFF2085 - Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 132,910 to 133,638 GFF2085 GFF2086 - hypothetical protein, at 133,635 to 134,084 GFF2086 GFF2087 - Ser/Thr and Tyr protein phosphatase (dual specificity), at 134,074 to 135,423 GFF2087 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1at 132.639 kb on + strand, within GFF2084at 132.640 kb on - strand, within GFF2084at 132.670 kb on - strand, within GFF2084at 132.670 kb on - strand, within GFF2084at 132.670 kb on - strand, within GFF2084at 133.367 kb on + strand, within GFF2085at 133.367 kb on + strand, within GFF2085at 133.367 kb on + strand, within GFF2085at 133.466 kb on + strand, within GFF2085at 133.466 kb on + strand, within GFF2085at 133.467 kb on - strand, within GFF2085at 133.891 kb on + strand, within GFF2086at 133.891 kb on + strand, within GFF2086at 133.892 kb on - strand, within GFF2086at 134.642 kb on + strand, within GFF2087at 134.642 kb on + strand, within GFF2087at 134.642 kb on + strand, within GFF2087at 134.642 kb on + strand, within GFF2087at 134.643 kb on - strand, within GFF2087at 134.747 kb on + strand, within GFF2087at 134.748 kb on - strand, within GFF2087at 134.785 kb on - strand, within GFF2087at 135.006 kb on + strand, within GFF2087at 135.006 kb on + strand, within GFF2087at 135.007 kb on - strand, within GFF2087

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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132,639 + GFF2084 0.71 -0.8
132,640 - GFF2084 0.71 +0.2
132,670 - GFF2084 0.74 -0.2
132,670 - GFF2084 0.74 -1.6
132,670 - GFF2084 0.74 -0.0
133,367 + GFF2085 0.63 -0.4
133,367 + GFF2085 0.63 -1.2
133,367 + GFF2085 0.63 -0.8
133,466 + GFF2085 0.76 -0.8
133,466 + GFF2085 0.76 +0.7
133,467 - GFF2085 0.76 -1.0
133,891 + GFF2086 0.57 -2.6
133,891 + GFF2086 0.57 -0.6
133,892 - GFF2086 0.57 +0.4
134,642 + GFF2087 0.42 -0.5
134,642 + GFF2087 0.42 -0.5
134,642 + GFF2087 0.42 -0.9
134,642 + GFF2087 0.42 -0.7
134,643 - GFF2087 0.42 -1.1
134,747 + GFF2087 0.50 -1.1
134,748 - GFF2087 0.50 +0.4
134,785 - GFF2087 0.53 -0.2
135,006 + GFF2087 0.69 +0.8
135,006 + GFF2087 0.69 +0.6
135,007 - GFF2087 0.69 -0.1

Or see this region's nucleotide sequence