Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2048 and GFF2049 are separated by 32 nucleotides GFF2049 and GFF2050 are separated by 26 nucleotides GFF2050 and GFF2051 are separated by 156 nucleotides GFF2051 and GFF2052 are separated by 142 nucleotides
GFF2048 - hypothetical protein, at 96,543 to 96,950
GFF2048
GFF2049 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 96,983 to 97,903
GFF2049
GFF2050 - hypothetical protein, at 97,930 to 98,430
GFF2050
GFF2051 - FIG00463476: hypothetical protein, at 98,587 to 99,234
GFF2051
GFF2052 - hypothetical protein, at 99,377 to 101,494
GFF2052
Position (kb) 97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 97.362 kb on + strand, within GFF2049 at 97.363 kb on - strand, within GFF2049 at 97.363 kb on - strand, within GFF2049 at 97.363 kb on - strand, within GFF2049 at 97.363 kb on - strand, within GFF2049 at 97.605 kb on + strand, within GFF2049 at 97.606 kb on - strand, within GFF2049 at 97.606 kb on - strand, within GFF2049 at 97.606 kb on - strand, within GFF2049 at 97.606 kb on - strand, within GFF2049 at 97.931 kb on + strand at 97.931 kb on + strand at 97.931 kb on + strand at 97.931 kb on + strand at 97.931 kb on + strand at 97.931 kb on + strand at 97.932 kb on - strand at 98.207 kb on + strand, within GFF2050 at 98.207 kb on + strand, within GFF2050 at 98.208 kb on - strand, within GFF2050 at 98.505 kb on + strand at 98.506 kb on - strand at 98.578 kb on - strand at 98.578 kb on - strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.768 kb on + strand, within GFF2051 at 98.768 kb on + strand, within GFF2051 at 98.768 kb on + strand, within GFF2051 at 98.768 kb on + strand, within GFF2051 at 98.768 kb on + strand, within GFF2051 at 98.768 kb on + strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.956 kb on - strand, within GFF2051 at 99.008 kb on + strand, within GFF2051 at 99.008 kb on + strand, within GFF2051 at 99.008 kb on + strand, within GFF2051 at 99.009 kb on - strand, within GFF2051 at 99.009 kb on - strand, within GFF2051 at 99.009 kb on - strand, within GFF2051 at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.269 kb on + strand at 99.270 kb on - strand at 99.270 kb on - strand at 99.270 kb on - strand at 99.270 kb on - strand at 99.270 kb on - strand at 99.304 kb on + strand at 99.304 kb on + strand at 99.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 97,362 + GFF2049 0.41 -1.2 97,363 - GFF2049 0.41 +0.5 97,363 - GFF2049 0.41 -0.4 97,363 - GFF2049 0.41 -0.8 97,363 - GFF2049 0.41 -0.5 97,605 + GFF2049 0.68 -0.4 97,606 - GFF2049 0.68 +0.2 97,606 - GFF2049 0.68 +0.2 97,606 - GFF2049 0.68 -1.6 97,606 - GFF2049 0.68 -0.7 97,931 + +0.0 97,931 + +0.5 97,931 + -0.1 97,931 + +0.6 97,931 + -0.1 97,931 + -0.1 97,932 - -1.7 98,207 + GFF2050 0.55 -0.1 98,207 + GFF2050 0.55 -1.1 98,208 - GFF2050 0.55 -2.1 98,505 + -0.0 98,506 - -0.8 98,578 - +0.3 98,578 - -1.2 98,588 + -0.6 98,588 + +0.6 98,588 + -1.2 98,588 + -0.4 98,588 + -0.2 98,588 + -0.6 98,588 + -0.8 98,588 + +0.2 98,589 - -1.4 98,589 - -0.1 98,589 - -0.3 98,589 - -1.1 98,589 - +0.8 98,589 - +0.8 98,589 - -0.2 98,589 - -0.2 98,768 + GFF2051 0.28 +0.6 98,768 + GFF2051 0.28 -1.2 98,768 + GFF2051 0.28 -0.2 98,768 + GFF2051 0.28 -0.1 98,768 + GFF2051 0.28 +0.8 98,768 + GFF2051 0.28 -0.1 98,769 - GFF2051 0.28 -0.5 98,769 - GFF2051 0.28 -0.4 98,769 - GFF2051 0.28 -0.3 98,769 - GFF2051 0.28 -1.6 98,769 - GFF2051 0.28 +0.6 98,769 - GFF2051 0.28 -0.4 98,769 - GFF2051 0.28 -0.4 98,956 - GFF2051 0.57 -0.2 99,008 + GFF2051 0.65 -0.6 99,008 + GFF2051 0.65 +0.4 99,008 + GFF2051 0.65 +1.0 99,009 - GFF2051 0.65 +0.6 99,009 - GFF2051 0.65 +0.3 99,009 - GFF2051 0.65 -0.7 99,269 + -1.9 99,269 + +0.1 99,269 + -0.9 99,269 + +0.6 99,269 + -0.3 99,269 + +0.8 99,269 + +0.0 99,269 + -0.2 99,269 + -0.2 99,269 + +0.6 99,270 - +0.5 99,270 - +0.5 99,270 - -0.4 99,270 - -0.3 99,270 - -0.6 99,304 + -0.1 99,304 + -1.7 99,305 - +1.8
Or see this region's nucleotide sequence