Strain Fitness in Variovorax sp. SCN45 around GFF2012

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2010 and GFF2011 are separated by 1 nucleotidesGFF2011 and GFF2012 are separated by 15 nucleotidesGFF2012 and GFF2013 are separated by 110 nucleotides GFF2010 - Methylglutaconyl-CoA hydratase (EC 4.2.1.18), at 55,157 to 55,963 GFF2010 GFF2011 - hypothetical protein, at 55,965 to 56,468 GFF2011 GFF2012 - Putative transmembrane protein, at 56,484 to 57,158 GFF2012 GFF2013 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 57,269 to 59,272 GFF2013 Position (kb) 56 57 58Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.610 kb on + strand, within GFF2010at 55.611 kb on - strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.650 kb on - strand, within GFF2010at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.559 kb on + strand, within GFF2012at 56.559 kb on + strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.593 kb on - strand, within GFF2012at 56.593 kb on - strand, within GFF2012at 57.156 kb on + strandat 57.156 kb on + strandat 57.156 kb on + strandat 57.274 kb on + strandat 57.282 kb on + strandat 57.282 kb on + strandat 57.283 kb on - strandat 57.283 kb on - strandat 57.286 kb on + strandat 57.286 kb on + strandat 57.286 kb on + strandat 57.286 kb on + strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.292 kb on + strandat 57.363 kb on - strandat 57.363 kb on - strandat 57.437 kb on - strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.447 kb on - strandat 57.872 kb on + strand, within GFF2013at 57.872 kb on + strand, within GFF2013at 57.872 kb on + strand, within GFF2013at 57.872 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.935 kb on + strand, within GFF2013at 57.935 kb on + strand, within GFF2013at 57.935 kb on + strand, within GFF2013at 57.935 kb on + strand, within GFF2013at 57.935 kb on + strand, within GFF2013at 57.936 kb on - strand, within GFF2013at 58.070 kb on + strand, within GFF2013at 58.070 kb on + strand, within GFF2013at 58.070 kb on + strand, within GFF2013at 58.070 kb on + strand, within GFF2013at 58.070 kb on + strand, within GFF2013at 58.070 kb on + strand, within GFF2013at 58.071 kb on - strand, within GFF2013at 58.071 kb on - strand, within GFF2013at 58.071 kb on - strand, within GFF2013at 58.071 kb on - strand, within GFF2013

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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55,496 + GFF2010 0.42 +1.0
55,496 + GFF2010 0.42 +0.2
55,496 + GFF2010 0.42 -2.1
55,496 + GFF2010 0.42 +0.8
55,496 + GFF2010 0.42 +0.3
55,497 - GFF2010 0.42 +0.8
55,497 - GFF2010 0.42 -0.6
55,497 - GFF2010 0.42 +0.8
55,497 - GFF2010 0.42 -0.4
55,497 - GFF2010 0.42 -0.2
55,497 - GFF2010 0.42 -1.4
55,497 - GFF2010 0.42 -0.6
55,497 - GFF2010 0.42 -0.6
55,497 - GFF2010 0.42 -0.8
55,497 - GFF2010 0.42 +2.8
55,560 - GFF2010 0.50 -0.2
55,560 - GFF2010 0.50 -0.3
55,560 - GFF2010 0.50 +0.2
55,560 - GFF2010 0.50 -0.1
55,610 + GFF2010 0.56 -0.6
55,611 - GFF2010 0.56 +0.1
55,649 + GFF2010 0.61 +0.1
55,649 + GFF2010 0.61 -0.3
55,649 + GFF2010 0.61 -0.4
55,649 + GFF2010 0.61 -0.2
55,650 - GFF2010 0.61 +0.4
56,307 + GFF2011 0.68 -0.2
56,307 + GFF2011 0.68 -0.4
56,307 + GFF2011 0.68 +0.5
56,307 + GFF2011 0.68 -0.4
56,307 + GFF2011 0.68 -0.3
56,308 - GFF2011 0.68 -0.4
56,308 - GFF2011 0.68 -0.0
56,308 - GFF2011 0.68 +0.8
56,308 - GFF2011 0.68 -0.0
56,308 - GFF2011 0.68 +1.0
56,308 - GFF2011 0.68 -0.4
56,559 + GFF2012 0.11 -0.8
56,559 + GFF2012 0.11 -0.5
56,560 - GFF2012 0.11 +0.5
56,560 - GFF2012 0.11 -0.1
56,560 - GFF2012 0.11 +4.1
56,560 - GFF2012 0.11 +0.3
56,593 - GFF2012 0.16 -0.2
56,593 - GFF2012 0.16 -0.7
57,156 + +0.2
57,156 + +0.8
57,156 + +0.8
57,274 + -0.5
57,282 + +1.3
57,282 + +0.2
57,283 - +0.2
57,283 - -1.1
57,286 + -0.9
57,286 + -1.0
57,286 + -0.2
57,286 + -1.6
57,287 - -3.5
57,287 - -0.1
57,287 - -0.9
57,287 - +0.0
57,287 - -0.9
57,287 - -1.9
57,292 + +0.5
57,363 - +0.2
57,363 - -0.0
57,437 - +0.3
57,446 + +0.3
57,446 + -0.9
57,446 + -0.3
57,446 + +0.5
57,446 + -1.3
57,446 + -1.0
57,446 + -0.6
57,447 - -0.8
57,872 + GFF2013 0.30 -0.0
57,872 + GFF2013 0.30 -0.4
57,872 + GFF2013 0.30 +1.5
57,872 + GFF2013 0.30 -0.4
57,929 + GFF2013 0.33 -0.8
57,929 + GFF2013 0.33 -1.5
57,929 + GFF2013 0.33 +0.0
57,929 + GFF2013 0.33 -0.1
57,929 + GFF2013 0.33 -1.0
57,929 + GFF2013 0.33 -0.8
57,929 + GFF2013 0.33 -2.6
57,929 + GFF2013 0.33 -1.9
57,929 + GFF2013 0.33 -0.0
57,929 + GFF2013 0.33 -0.4
57,929 + GFF2013 0.33 -1.1
57,929 + GFF2013 0.33 +2.3
57,929 + GFF2013 0.33 +1.2
57,929 + GFF2013 0.33 -0.6
57,929 + GFF2013 0.33 -1.0
57,929 + GFF2013 0.33 -1.0
57,929 + GFF2013 0.33 -0.9
57,929 + GFF2013 0.33 -1.3
57,929 + GFF2013 0.33 -0.6
57,929 + GFF2013 0.33 -1.3
57,929 + GFF2013 0.33 +0.2
57,929 + GFF2013 0.33 +0.4
57,929 + GFF2013 0.33 +0.1
57,929 + GFF2013 0.33 -0.1
57,929 + GFF2013 0.33 -2.6
57,929 + GFF2013 0.33 +0.9
57,929 + GFF2013 0.33 -1.9
57,929 + GFF2013 0.33 +0.8
57,930 - GFF2013 0.33 -0.2
57,930 - GFF2013 0.33 -2.2
57,930 - GFF2013 0.33 -1.0
57,930 - GFF2013 0.33 -0.4
57,930 - GFF2013 0.33 +1.4
57,930 - GFF2013 0.33 +0.8
57,930 - GFF2013 0.33 +2.3
57,930 - GFF2013 0.33 -1.2
57,930 - GFF2013 0.33 -0.2
57,930 - GFF2013 0.33 +0.8
57,930 - GFF2013 0.33 +1.8
57,930 - GFF2013 0.33 -1.1
57,930 - GFF2013 0.33 -0.4
57,930 - GFF2013 0.33 -0.0
57,930 - GFF2013 0.33 +0.6
57,930 - GFF2013 0.33 -0.8
57,930 - GFF2013 0.33 -0.6
57,930 - GFF2013 0.33 +0.9
57,935 + GFF2013 0.33 +1.8
57,935 + GFF2013 0.33 +0.3
57,935 + GFF2013 0.33 -0.5
57,935 + GFF2013 0.33 -0.4
57,935 + GFF2013 0.33 +0.2
57,936 - GFF2013 0.33 -0.7
58,070 + GFF2013 0.40 -2.0
58,070 + GFF2013 0.40 -0.8
58,070 + GFF2013 0.40 +1.2
58,070 + GFF2013 0.40 -1.4
58,070 + GFF2013 0.40 -0.2
58,070 + GFF2013 0.40 -0.1
58,071 - GFF2013 0.40 +0.6
58,071 - GFF2013 0.40 +0.3
58,071 - GFF2013 0.40 -0.6
58,071 - GFF2013 0.40 -0.5

Or see this region's nucleotide sequence