Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1970 and GFF1971 are separated by 75 nucleotides GFF1971 and GFF1972 are separated by 17 nucleotides
GFF1970 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 12,893 to 13,876
GFF1970
GFF1971 - Creatinine amidohydrolase (EC 3.5.2.10), at 13,952 to 14,815
GFF1971
GFF1972 - Cytosine deaminase (EC 3.5.4.1), at 14,833 to 16,110
GFF1972
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 12.993 kb on + strand, within GFF1970 at 12.993 kb on + strand, within GFF1970 at 12.993 kb on + strand, within GFF1970 at 12.993 kb on + strand, within GFF1970 at 12.993 kb on + strand, within GFF1970 at 12.993 kb on + strand, within GFF1970 at 12.994 kb on - strand, within GFF1970 at 12.994 kb on - strand, within GFF1970 at 13.092 kb on + strand, within GFF1970 at 13.093 kb on - strand, within GFF1970 at 13.167 kb on + strand, within GFF1970 at 13.167 kb on + strand, within GFF1970 at 13.167 kb on + strand, within GFF1970 at 13.167 kb on + strand, within GFF1970 at 13.168 kb on - strand, within GFF1970 at 13.168 kb on - strand, within GFF1970 at 13.168 kb on - strand, within GFF1970 at 13.263 kb on + strand, within GFF1970 at 13.347 kb on + strand, within GFF1970 at 13.347 kb on + strand, within GFF1970 at 13.347 kb on + strand, within GFF1970 at 13.347 kb on + strand, within GFF1970 at 13.401 kb on + strand, within GFF1970 at 13.401 kb on + strand, within GFF1970 at 13.402 kb on - strand, within GFF1970 at 13.402 kb on - strand, within GFF1970 at 13.713 kb on + strand, within GFF1970 at 13.713 kb on + strand, within GFF1970 at 13.713 kb on + strand, within GFF1970 at 13.713 kb on + strand, within GFF1970 at 13.713 kb on + strand, within GFF1970 at 13.714 kb on - strand, within GFF1970 at 13.714 kb on - strand, within GFF1970 at 13.722 kb on + strand, within GFF1970 at 13.722 kb on + strand, within GFF1970 at 13.722 kb on + strand, within GFF1970 at 13.722 kb on + strand, within GFF1970 at 13.722 kb on + strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.746 kb on + strand, within GFF1970 at 13.746 kb on + strand, within GFF1970 at 13.746 kb on + strand, within GFF1970 at 13.746 kb on + strand, within GFF1970 at 13.747 kb on - strand, within GFF1970 at 13.747 kb on - strand, within GFF1970 at 13.747 kb on - strand, within GFF1970 at 13.774 kb on - strand, within GFF1970 at 13.774 kb on - strand, within GFF1970 at 13.774 kb on - strand, within GFF1970 at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.789 kb on - strand at 13.789 kb on - strand at 13.789 kb on - strand at 13.789 kb on - strand at 14.485 kb on - strand, within GFF1971 at 14.581 kb on - strand, within GFF1971 at 14.803 kb on - strand at 14.803 kb on - strand at 14.803 kb on - strand at 14.834 kb on + strand at 14.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 12,993 + GFF1970 0.10 +0.2 12,993 + GFF1970 0.10 -0.1 12,993 + GFF1970 0.10 -0.2 12,993 + GFF1970 0.10 +0.4 12,993 + GFF1970 0.10 -0.2 12,993 + GFF1970 0.10 +0.8 12,994 - GFF1970 0.10 -1.0 12,994 - GFF1970 0.10 -0.2 13,092 + GFF1970 0.20 -0.2 13,093 - GFF1970 0.20 -0.2 13,167 + GFF1970 0.28 +0.8 13,167 + GFF1970 0.28 -0.4 13,167 + GFF1970 0.28 +0.2 13,167 + GFF1970 0.28 +0.3 13,168 - GFF1970 0.28 -0.2 13,168 - GFF1970 0.28 +0.4 13,168 - GFF1970 0.28 +1.0 13,263 + GFF1970 0.38 +0.2 13,347 + GFF1970 0.46 +0.5 13,347 + GFF1970 0.46 +0.2 13,347 + GFF1970 0.46 -1.2 13,347 + GFF1970 0.46 +0.2 13,401 + GFF1970 0.52 -0.1 13,401 + GFF1970 0.52 -1.0 13,402 - GFF1970 0.52 +0.7 13,402 - GFF1970 0.52 -0.9 13,713 + GFF1970 0.83 +0.9 13,713 + GFF1970 0.83 +0.2 13,713 + GFF1970 0.83 +1.6 13,713 + GFF1970 0.83 -1.7 13,713 + GFF1970 0.83 -1.9 13,714 - GFF1970 0.83 -0.6 13,714 - GFF1970 0.83 +0.3 13,722 + GFF1970 0.84 +0.5 13,722 + GFF1970 0.84 -0.0 13,722 + GFF1970 0.84 +1.1 13,722 + GFF1970 0.84 -0.6 13,722 + GFF1970 0.84 +0.6 13,723 - GFF1970 0.84 -1.8 13,723 - GFF1970 0.84 -1.0 13,723 - GFF1970 0.84 -1.2 13,723 - GFF1970 0.84 +0.3 13,723 - GFF1970 0.84 -0.1 13,723 - GFF1970 0.84 -1.6 13,723 - GFF1970 0.84 -0.6 13,746 + GFF1970 0.87 -0.8 13,746 + GFF1970 0.87 -0.3 13,746 + GFF1970 0.87 +0.2 13,746 + GFF1970 0.87 +0.9 13,747 - GFF1970 0.87 +0.2 13,747 - GFF1970 0.87 -0.2 13,747 - GFF1970 0.87 -0.7 13,774 - GFF1970 0.90 -1.4 13,774 - GFF1970 0.90 -0.3 13,774 - GFF1970 0.90 -0.1 13,788 + +0.2 13,788 + -0.5 13,788 + -1.1 13,788 + -0.4 13,788 + -1.1 13,788 + -0.3 13,788 + -0.6 13,788 + -0.6 13,789 - -0.4 13,789 - -0.1 13,789 - +0.0 13,789 - -0.6 14,485 - GFF1971 0.62 -0.7 14,581 - GFF1971 0.73 -1.3 14,803 - +0.2 14,803 - -0.6 14,803 - +0.4 14,834 + +1.4 14,835 - +0.3
Or see this region's nucleotide sequence