Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1897 and GFF1898 are separated by 122 nucleotides GFF1898 and GFF1899 overlap by 6 nucleotides
GFF1897 - Two-component system sensor histidine kinase/response regulator hybrid, at 571,169 to 573,343
GFF1897
GFF1898 - Phosphoserine phosphatase (EC 3.1.3.3), at 573,466 to 574,119
GFF1898
GFF1899 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 574,114 to 577,656
GFF1899
Position (kb) 573
574
575 Strain fitness (log2 ratio) -1
0
1
2 at 572.533 kb on - strand, within GFF1897 at 572.599 kb on - strand, within GFF1897 at 572.658 kb on + strand, within GFF1897 at 572.659 kb on - strand, within GFF1897 at 572.860 kb on - strand, within GFF1897 at 572.899 kb on - strand, within GFF1897 at 572.988 kb on + strand, within GFF1897 at 572.988 kb on + strand, within GFF1897 at 572.988 kb on + strand, within GFF1897 at 573.030 kb on + strand, within GFF1897 at 573.031 kb on - strand, within GFF1897 at 573.120 kb on + strand, within GFF1897 at 573.120 kb on + strand, within GFF1897 at 573.121 kb on - strand, within GFF1897 at 573.121 kb on - strand, within GFF1897 at 573.121 kb on - strand, within GFF1897 at 573.126 kb on + strand at 573.126 kb on + strand at 573.126 kb on + strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.823 kb on + strand, within GFF1898 at 573.823 kb on + strand, within GFF1898 at 573.823 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.992 kb on - strand, within GFF1898 at 573.992 kb on - strand, within GFF1898 at 573.998 kb on - strand, within GFF1898 at 574.223 kb on + strand at 574.574 kb on + strand, within GFF1899 at 574.593 kb on - strand, within GFF1899 at 574.593 kb on - strand, within GFF1899 at 574.593 kb on - strand, within GFF1899 at 574.605 kb on - strand, within GFF1899 at 574.707 kb on - strand, within GFF1899 at 574.718 kb on + strand, within GFF1899 at 574.719 kb on - strand, within GFF1899 at 574.719 kb on - strand, within GFF1899 at 574.734 kb on - strand, within GFF1899 at 574.734 kb on - strand, within GFF1899
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 572,533 - GFF1897 0.63 -0.0 572,599 - GFF1897 0.66 -1.0 572,658 + GFF1897 0.68 -0.4 572,659 - GFF1897 0.69 -0.2 572,860 - GFF1897 0.78 +0.7 572,899 - GFF1897 0.80 +0.3 572,988 + GFF1897 0.84 +0.7 572,988 + GFF1897 0.84 -0.2 572,988 + GFF1897 0.84 +0.1 573,030 + GFF1897 0.86 +0.1 573,031 - GFF1897 0.86 +0.3 573,120 + GFF1897 0.90 -0.8 573,120 + GFF1897 0.90 -0.7 573,121 - GFF1897 0.90 +1.8 573,121 - GFF1897 0.90 +0.4 573,121 - GFF1897 0.90 +0.2 573,126 + -0.6 573,126 + -0.6 573,126 + +0.1 573,127 - +1.2 573,127 - +0.4 573,127 - -1.3 573,127 - +0.4 573,127 - -0.3 573,127 - +0.3 573,823 + GFF1898 0.55 -0.4 573,823 + GFF1898 0.55 +0.5 573,823 + GFF1898 0.55 +1.0 573,991 + GFF1898 0.80 -0.6 573,991 + GFF1898 0.80 +0.8 573,991 + GFF1898 0.80 -0.6 573,991 + GFF1898 0.80 +0.3 573,992 - GFF1898 0.80 +0.8 573,992 - GFF1898 0.80 -0.5 573,998 - GFF1898 0.81 -0.2 574,223 + -0.7 574,574 + GFF1899 0.13 -0.6 574,593 - GFF1899 0.14 -0.2 574,593 - GFF1899 0.14 -0.9 574,593 - GFF1899 0.14 +0.1 574,605 - GFF1899 0.14 -0.1 574,707 - GFF1899 0.17 -1.6 574,718 + GFF1899 0.17 -0.2 574,719 - GFF1899 0.17 -0.2 574,719 - GFF1899 0.17 -1.1 574,734 - GFF1899 0.17 +0.6 574,734 - GFF1899 0.17 -0.0
Or see this region's nucleotide sequence