Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1873 and GFF1875 are separated by 45 nucleotides GFF1875 and GFF1874 overlap by 2 nucleotides GFF1874 and GFF1876 are separated by 12 nucleotides
GFF1873 - KEGG: LacI family transcriptional regulator, at 547,436 to 548,446
GFF1873
GFF1875 - no description, at 548,492 to 548,626
GFF1875
GFF1874 - 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7), at 548,625 to 549,581
GFF1874
GFF1876 - Dihydrodipicolinate synthase family, at 549,594 to 550,487
GFF1876
Position (kb) 548
549 Strain fitness (log2 ratio) -1
0
1
2 at 547.630 kb on - strand, within GFF1873 at 547.630 kb on - strand, within GFF1873 at 547.788 kb on + strand, within GFF1873 at 547.788 kb on + strand, within GFF1873 at 547.789 kb on - strand, within GFF1873 at 547.851 kb on + strand, within GFF1873 at 547.950 kb on + strand, within GFF1873 at 548.175 kb on + strand, within GFF1873 at 548.175 kb on + strand, within GFF1873 at 548.588 kb on - strand, within GFF1875 at 548.588 kb on - strand, within GFF1875 at 549.249 kb on + strand, within GFF1874 at 549.250 kb on - strand, within GFF1874 at 549.390 kb on + strand, within GFF1874 at 549.390 kb on + strand, within GFF1874 at 549.402 kb on + strand, within GFF1874 at 549.402 kb on + strand, within GFF1874 at 549.403 kb on - strand, within GFF1874 at 549.615 kb on + strand at 549.615 kb on + strand at 549.615 kb on + strand at 549.615 kb on + strand at 549.615 kb on + strand at 549.616 kb on - strand at 549.616 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 547,630 - GFF1873 0.19 -0.2 547,630 - GFF1873 0.19 -1.6 547,788 + GFF1873 0.35 +0.8 547,788 + GFF1873 0.35 +1.3 547,789 - GFF1873 0.35 +0.8 547,851 + GFF1873 0.41 -0.9 547,950 + GFF1873 0.51 +0.2 548,175 + GFF1873 0.73 +1.3 548,175 + GFF1873 0.73 +0.0 548,588 - GFF1875 0.71 +1.8 548,588 - GFF1875 0.71 -0.8 549,249 + GFF1874 0.65 -1.5 549,250 - GFF1874 0.65 +0.0 549,390 + GFF1874 0.80 -0.6 549,390 + GFF1874 0.80 +0.8 549,402 + GFF1874 0.81 -0.7 549,402 + GFF1874 0.81 +1.2 549,403 - GFF1874 0.81 +0.8 549,615 + -0.8 549,615 + -0.1 549,615 + +1.0 549,615 + +0.8 549,615 + +0.4 549,616 - +0.6 549,616 - +0.2
Or see this region's nucleotide sequence