Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1855 and GFF1856 are separated by 28 nucleotides GFF1856 and GFF1857 are separated by 92 nucleotides GFF1857 and GFF1858 overlap by 4 nucleotides GFF1858 and GFF1859 overlap by 4 nucleotides
GFF1855 - no description, at 530,164 to 531,324
GFF1855
GFF1856 - FIG00636408: hypothetical protein, at 531,353 to 531,745
GFF1856
GFF1857 - FIG00553873: hypothetical protein, at 531,838 to 533,118
GFF1857
GFF1858 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 533,115 to 533,879
GFF1858
GFF1859 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 533,876 to 534,547
GFF1859
Position (kb) 531
532
533
534 Strain fitness (log2 ratio) -2
-1
0
1
2 at 530.875 kb on + strand, within GFF1855 at 530.980 kb on + strand, within GFF1855 at 530.980 kb on + strand, within GFF1855 at 530.981 kb on - strand, within GFF1855 at 530.981 kb on - strand, within GFF1855 at 531.098 kb on + strand, within GFF1855 at 531.098 kb on + strand, within GFF1855 at 531.098 kb on + strand, within GFF1855 at 531.232 kb on + strand at 531.232 kb on + strand at 531.233 kb on - strand at 531.233 kb on - strand at 531.233 kb on - strand at 531.310 kb on + strand at 531.310 kb on + strand at 531.310 kb on + strand at 531.310 kb on + strand at 531.310 kb on + strand at 531.311 kb on - strand at 531.311 kb on - strand at 531.313 kb on + strand at 531.313 kb on + strand at 531.313 kb on + strand at 531.313 kb on + strand at 531.313 kb on + strand at 531.314 kb on - strand at 531.323 kb on - strand at 531.555 kb on + strand, within GFF1856 at 531.555 kb on + strand, within GFF1856 at 531.556 kb on - strand, within GFF1856 at 531.556 kb on - strand, within GFF1856 at 531.556 kb on - strand, within GFF1856 at 531.600 kb on + strand, within GFF1856 at 531.864 kb on - strand at 531.887 kb on + strand at 531.887 kb on + strand at 531.887 kb on + strand at 531.888 kb on - strand at 531.888 kb on - strand at 531.888 kb on - strand at 531.908 kb on - strand at 531.908 kb on - strand at 532.022 kb on + strand, within GFF1857 at 532.022 kb on + strand, within GFF1857 at 532.023 kb on - strand, within GFF1857 at 532.110 kb on - strand, within GFF1857 at 532.110 kb on - strand, within GFF1857 at 532.110 kb on - strand, within GFF1857 at 532.116 kb on - strand, within GFF1857 at 532.250 kb on + strand, within GFF1857 at 532.251 kb on - strand, within GFF1857 at 532.251 kb on - strand, within GFF1857 at 532.360 kb on + strand, within GFF1857 at 532.360 kb on + strand, within GFF1857 at 532.361 kb on - strand, within GFF1857 at 532.398 kb on - strand, within GFF1857 at 532.508 kb on + strand, within GFF1857 at 532.508 kb on + strand, within GFF1857 at 532.508 kb on + strand, within GFF1857 at 532.509 kb on - strand, within GFF1857 at 532.509 kb on - strand, within GFF1857 at 533.722 kb on + strand, within GFF1858 at 533.928 kb on + strand at 533.928 kb on + strand at 533.928 kb on + strand at 533.928 kb on + strand at 533.929 kb on - strand at 533.929 kb on - strand at 533.929 kb on - strand at 533.955 kb on + strand, within GFF1859 at 533.955 kb on + strand, within GFF1859 at 533.955 kb on + strand, within GFF1859 at 533.956 kb on - strand, within GFF1859 at 533.956 kb on - strand, within GFF1859 at 533.956 kb on - strand, within GFF1859 at 533.956 kb on - strand, within GFF1859 at 533.976 kb on + strand, within GFF1859 at 533.976 kb on + strand, within GFF1859 at 533.977 kb on - strand, within GFF1859 at 534.097 kb on - strand, within GFF1859 at 534.097 kb on - strand, within GFF1859
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 530,875 + GFF1855 0.61 -0.4 530,980 + GFF1855 0.70 -0.3 530,980 + GFF1855 0.70 -0.7 530,981 - GFF1855 0.70 +0.3 530,981 - GFF1855 0.70 +1.6 531,098 + GFF1855 0.80 -1.2 531,098 + GFF1855 0.80 +0.5 531,098 + GFF1855 0.80 -1.0 531,232 + +0.4 531,232 + +0.1 531,233 - -0.6 531,233 - -0.8 531,233 - +0.4 531,310 + -0.6 531,310 + -1.2 531,310 + +0.9 531,310 + +0.0 531,310 + +0.2 531,311 - -0.7 531,311 - -0.1 531,313 + -1.2 531,313 + -0.2 531,313 + +1.8 531,313 + -0.0 531,313 + -2.0 531,314 - +0.3 531,323 - +0.1 531,555 + GFF1856 0.51 -0.9 531,555 + GFF1856 0.51 +0.5 531,556 - GFF1856 0.52 -0.6 531,556 - GFF1856 0.52 -0.7 531,556 - GFF1856 0.52 -1.1 531,600 + GFF1856 0.63 +0.8 531,864 - +0.1 531,887 + -0.9 531,887 + -0.2 531,887 + +0.0 531,888 - +0.4 531,888 - -0.2 531,888 - -1.3 531,908 - +0.8 531,908 - -0.9 532,022 + GFF1857 0.14 +0.9 532,022 + GFF1857 0.14 +0.2 532,023 - GFF1857 0.14 +0.6 532,110 - GFF1857 0.21 +0.6 532,110 - GFF1857 0.21 +0.3 532,110 - GFF1857 0.21 +0.4 532,116 - GFF1857 0.22 -0.6 532,250 + GFF1857 0.32 +0.2 532,251 - GFF1857 0.32 -0.8 532,251 - GFF1857 0.32 +0.8 532,360 + GFF1857 0.41 -1.1 532,360 + GFF1857 0.41 +1.3 532,361 - GFF1857 0.41 -0.1 532,398 - GFF1857 0.44 -0.2 532,508 + GFF1857 0.52 +0.7 532,508 + GFF1857 0.52 -1.1 532,508 + GFF1857 0.52 +0.1 532,509 - GFF1857 0.52 -0.6 532,509 - GFF1857 0.52 -1.0 533,722 + GFF1858 0.79 -0.8 533,928 + -0.5 533,928 + +1.0 533,928 + +0.2 533,928 + +0.0 533,929 - -0.0 533,929 - -1.4 533,929 - +0.6 533,955 + GFF1859 0.12 +1.2 533,955 + GFF1859 0.12 -1.2 533,955 + GFF1859 0.12 +1.2 533,956 - GFF1859 0.12 -0.1 533,956 - GFF1859 0.12 +0.1 533,956 - GFF1859 0.12 +0.1 533,956 - GFF1859 0.12 -0.1 533,976 + GFF1859 0.15 -0.5 533,976 + GFF1859 0.15 -0.3 533,977 - GFF1859 0.15 +1.8 534,097 - GFF1859 0.33 -0.7 534,097 - GFF1859 0.33 +0.1
Or see this region's nucleotide sequence