Strain Fitness in Variovorax sp. SCN45 around GFF1822

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1821 and GFF1822 are separated by 162 nucleotidesGFF1822 and GFF1823 are separated by 15 nucleotidesGFF1823 and GFF1824 are separated by 37 nucleotides GFF1821 - D-glycerate 2-kinase (EC 2.7.1.165), at 484,747 to 486,087 GFF1821 GFF1822 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26), at 486,250 to 487,692 GFF1822 GFF1823 - Mg(2+)-transport-ATPase-associated protein MgtC, at 487,708 to 488,424 GFF1823 GFF1824 - hypothetical protein, at 488,462 to 489,037 GFF1824 Position (kb) 486 487 488Strain fitness (log2 ratio) -2 -1 0 1at 485.453 kb on - strand, within GFF1821at 485.453 kb on - strand, within GFF1821at 485.977 kb on + strandat 485.977 kb on + strandat 485.977 kb on + strandat 485.977 kb on + strandat 485.977 kb on + strandat 485.978 kb on - strandat 485.978 kb on - strandat 485.978 kb on - strandat 485.978 kb on - strandat 485.978 kb on - strandat 485.978 kb on - strandat 485.998 kb on + strandat 485.998 kb on + strandat 485.998 kb on + strandat 485.998 kb on + strandat 485.998 kb on + strandat 485.999 kb on - strandat 485.999 kb on - strandat 485.999 kb on - strandat 485.999 kb on - strandat 486.004 kb on + strandat 486.004 kb on + strandat 486.004 kb on + strandat 486.005 kb on - strandat 486.005 kb on - strandat 486.086 kb on - strandat 486.133 kb on - strandat 486.137 kb on + strandat 486.137 kb on + strandat 486.137 kb on + strandat 486.138 kb on - strandat 486.138 kb on - strandat 486.138 kb on - strandat 486.138 kb on - strandat 486.262 kb on + strandat 486.262 kb on + strandat 486.262 kb on + strandat 486.262 kb on + strandat 486.262 kb on + strandat 486.262 kb on + strandat 486.262 kb on + strandat 486.263 kb on - strandat 486.263 kb on - strandat 486.619 kb on + strand, within GFF1822at 486.896 kb on - strand, within GFF1822at 486.896 kb on - strand, within GFF1822at 486.896 kb on - strand, within GFF1822at 486.896 kb on - strand, within GFF1822at 487.174 kb on + strand, within GFF1822at 487.174 kb on + strand, within GFF1822at 487.174 kb on + strand, within GFF1822at 487.175 kb on - strand, within GFF1822at 487.175 kb on - strand, within GFF1822at 487.175 kb on - strand, within GFF1822at 487.618 kb on + strandat 487.618 kb on + strandat 487.654 kb on + strandat 487.812 kb on - strand, within GFF1823at 487.878 kb on - strand, within GFF1823at 487.958 kb on + strand, within GFF1823at 487.958 kb on + strand, within GFF1823at 487.958 kb on + strand, within GFF1823at 487.959 kb on - strand, within GFF1823at 487.959 kb on - strand, within GFF1823at 487.959 kb on - strand, within GFF1823at 487.959 kb on - strand, within GFF1823at 487.959 kb on - strand, within GFF1823at 488.028 kb on + strand, within GFF1823at 488.029 kb on - strand, within GFF1823at 488.029 kb on - strand, within GFF1823at 488.029 kb on - strand, within GFF1823at 488.029 kb on - strand, within GFF1823at 488.029 kb on - strand, within GFF1823at 488.130 kb on + strand, within GFF1823at 488.131 kb on - strand, within GFF1823at 488.204 kb on + strand, within GFF1823at 488.204 kb on + strand, within GFF1823at 488.205 kb on - strand, within GFF1823at 488.205 kb on - strand, within GFF1823at 488.205 kb on - strand, within GFF1823at 488.205 kb on - strand, within GFF1823at 488.205 kb on - strand, within GFF1823at 488.205 kb on - strand, within GFF1823at 488.447 kb on + strandat 488.447 kb on + strandat 488.448 kb on - strandat 488.565 kb on + strand, within GFF1824at 488.566 kb on - strand, within GFF1824at 488.637 kb on + strand, within GFF1824at 488.637 kb on + strand, within GFF1824at 488.637 kb on + strand, within GFF1824at 488.638 kb on - strand, within GFF1824at 488.638 kb on - strand, within GFF1824

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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485,453 - GFF1821 0.53 +1.2
485,453 - GFF1821 0.53 -0.2
485,977 + +0.2
485,977 + -0.3
485,977 + +0.4
485,977 + -0.7
485,977 + -0.8
485,978 - -0.8
485,978 - -0.7
485,978 - -1.2
485,978 - +0.3
485,978 - +0.0
485,978 - -1.2
485,998 + -0.1
485,998 + -1.1
485,998 + +0.2
485,998 + +0.2
485,998 + -0.5
485,999 - +0.1
485,999 - -0.1
485,999 - +1.3
485,999 - -1.2
486,004 + +0.2
486,004 + +0.1
486,004 + -0.2
486,005 - +0.8
486,005 - -1.4
486,086 - -0.7
486,133 - -0.4
486,137 + +1.0
486,137 + -0.2
486,137 + +0.8
486,138 - +0.2
486,138 - -0.4
486,138 - -1.0
486,138 - -0.3
486,262 + +1.0
486,262 + -0.5
486,262 + -0.2
486,262 + +0.2
486,262 + -0.8
486,262 + +0.1
486,262 + -0.9
486,263 - -1.4
486,263 - +0.4
486,619 + GFF1822 0.26 +0.1
486,896 - GFF1822 0.45 +0.1
486,896 - GFF1822 0.45 -0.4
486,896 - GFF1822 0.45 +1.3
486,896 - GFF1822 0.45 -2.1
487,174 + GFF1822 0.64 -0.2
487,174 + GFF1822 0.64 +0.5
487,174 + GFF1822 0.64 -0.6
487,175 - GFF1822 0.64 -0.2
487,175 - GFF1822 0.64 +0.4
487,175 - GFF1822 0.64 -1.2
487,618 + -0.5
487,618 + -0.5
487,654 + +0.5
487,812 - GFF1823 0.15 -0.5
487,878 - GFF1823 0.24 +0.1
487,958 + GFF1823 0.35 -2.4
487,958 + GFF1823 0.35 -0.3
487,958 + GFF1823 0.35 -1.1
487,959 - GFF1823 0.35 -0.2
487,959 - GFF1823 0.35 -0.2
487,959 - GFF1823 0.35 -1.0
487,959 - GFF1823 0.35 +0.4
487,959 - GFF1823 0.35 +0.1
488,028 + GFF1823 0.45 -0.4
488,029 - GFF1823 0.45 -0.2
488,029 - GFF1823 0.45 +0.6
488,029 - GFF1823 0.45 -0.4
488,029 - GFF1823 0.45 +0.0
488,029 - GFF1823 0.45 -0.2
488,130 + GFF1823 0.59 -0.2
488,131 - GFF1823 0.59 +0.0
488,204 + GFF1823 0.69 -1.2
488,204 + GFF1823 0.69 -2.0
488,205 - GFF1823 0.69 +0.2
488,205 - GFF1823 0.69 -0.3
488,205 - GFF1823 0.69 +1.2
488,205 - GFF1823 0.69 -0.5
488,205 - GFF1823 0.69 -0.1
488,205 - GFF1823 0.69 -1.0
488,447 + -2.2
488,447 + -0.6
488,448 - -1.1
488,565 + GFF1824 0.18 -0.1
488,566 - GFF1824 0.18 -0.4
488,637 + GFF1824 0.30 -1.2
488,637 + GFF1824 0.30 +0.0
488,637 + GFF1824 0.30 -0.4
488,638 - GFF1824 0.31 +0.2
488,638 - GFF1824 0.31 +0.6

Or see this region's nucleotide sequence