Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1779 and GFF1780 are separated by 11 nucleotides GFF1780 and GFF1781 are separated by 158 nucleotides GFF1781 and GFF1782 overlap by 4 nucleotides
GFF1779 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 439,873 to 440,745
GFF1779
GFF1780 - hypothetical protein, at 440,757 to 441,890
GFF1780
GFF1781 - Two-component transcriptional response regulator, LuxR family, at 442,049 to 442,732
GFF1781
GFF1782 - integral membrane sensor signal transduction histidine kinase, at 442,729 to 444,156
GFF1782
Position (kb) 440
441
442 Strain fitness (log2 ratio) -2
-1
0
1
2 at 439.759 kb on + strand at 439.763 kb on + strand at 439.770 kb on + strand at 439.770 kb on + strand at 439.770 kb on + strand at 439.770 kb on + strand at 439.774 kb on + strand at 439.775 kb on - strand at 439.788 kb on + strand at 439.789 kb on - strand at 439.798 kb on + strand at 439.803 kb on + strand at 439.804 kb on - strand at 439.804 kb on - strand at 439.807 kb on + strand at 439.807 kb on + strand at 439.936 kb on + strand at 439.936 kb on + strand at 439.936 kb on + strand at 440.074 kb on + strand, within GFF1779 at 440.075 kb on - strand, within GFF1779 at 440.080 kb on + strand, within GFF1779 at 440.219 kb on - strand, within GFF1779 at 440.410 kb on + strand, within GFF1779 at 440.411 kb on - strand, within GFF1779 at 440.743 kb on + strand at 441.298 kb on + strand, within GFF1780 at 441.319 kb on + strand, within GFF1780 at 441.320 kb on - strand, within GFF1780 at 441.320 kb on - strand, within GFF1780 at 441.320 kb on - strand, within GFF1780 at 441.362 kb on - strand, within GFF1780 at 441.466 kb on + strand, within GFF1780 at 441.467 kb on - strand, within GFF1780 at 441.903 kb on + strand at 441.903 kb on + strand at 441.903 kb on + strand at 441.903 kb on + strand at 441.907 kb on + strand at 441.907 kb on + strand at 441.907 kb on + strand at 441.908 kb on - strand at 441.908 kb on - strand at 441.908 kb on - strand at 441.908 kb on - strand at 441.998 kb on + strand at 441.998 kb on + strand at 441.998 kb on + strand at 442.263 kb on + strand, within GFF1781 at 442.263 kb on + strand, within GFF1781 at 442.340 kb on + strand, within GFF1781 at 442.340 kb on + strand, within GFF1781 at 442.341 kb on - strand, within GFF1781 at 442.406 kb on + strand, within GFF1781 at 442.406 kb on + strand, within GFF1781 at 442.627 kb on + strand, within GFF1781 at 442.627 kb on + strand, within GFF1781 at 442.627 kb on + strand, within GFF1781 at 442.627 kb on + strand, within GFF1781 at 442.628 kb on - strand, within GFF1781 at 442.628 kb on - strand, within GFF1781 at 442.628 kb on - strand, within GFF1781 at 442.661 kb on + strand, within GFF1781 at 442.661 kb on + strand, within GFF1781 at 442.661 kb on + strand, within GFF1781 at 442.661 kb on + strand, within GFF1781 at 442.661 kb on + strand, within GFF1781 at 442.662 kb on - strand, within GFF1781 at 442.662 kb on - strand, within GFF1781 at 442.662 kb on - strand, within GFF1781 at 442.662 kb on - strand, within GFF1781 at 442.664 kb on - strand at 442.664 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 439,759 + -0.8 439,763 + -0.5 439,770 + -0.9 439,770 + +0.1 439,770 + -0.2 439,770 + -2.5 439,774 + -0.6 439,775 - -1.1 439,788 + -1.1 439,789 - +0.8 439,798 + +0.2 439,803 + -0.6 439,804 - +0.1 439,804 - -0.4 439,807 + -1.2 439,807 + -0.3 439,936 + +0.5 439,936 + -0.7 439,936 + -1.1 440,074 + GFF1779 0.23 -0.7 440,075 - GFF1779 0.23 -0.7 440,080 + GFF1779 0.24 -0.2 440,219 - GFF1779 0.40 +1.1 440,410 + GFF1779 0.62 -0.4 440,411 - GFF1779 0.62 -0.2 440,743 + +0.5 441,298 + GFF1780 0.48 -0.7 441,319 + GFF1780 0.50 -1.1 441,320 - GFF1780 0.50 -0.2 441,320 - GFF1780 0.50 -0.9 441,320 - GFF1780 0.50 -0.8 441,362 - GFF1780 0.53 -0.2 441,466 + GFF1780 0.63 -1.0 441,467 - GFF1780 0.63 -0.7 441,903 + -0.2 441,903 + +0.2 441,903 + -1.0 441,903 + -0.4 441,907 + -0.5 441,907 + +0.8 441,907 + -0.1 441,908 - -0.1 441,908 - +0.2 441,908 - +0.3 441,908 - +0.8 441,998 + +1.8 441,998 + -0.9 441,998 + +0.8 442,263 + GFF1781 0.31 +0.3 442,263 + GFF1781 0.31 -1.1 442,340 + GFF1781 0.43 -0.3 442,340 + GFF1781 0.43 -0.0 442,341 - GFF1781 0.43 +1.2 442,406 + GFF1781 0.52 -0.2 442,406 + GFF1781 0.52 -0.7 442,627 + GFF1781 0.85 -0.4 442,627 + GFF1781 0.85 +0.2 442,627 + GFF1781 0.85 -0.4 442,627 + GFF1781 0.85 -1.4 442,628 - GFF1781 0.85 -0.0 442,628 - GFF1781 0.85 -0.3 442,628 - GFF1781 0.85 +0.2 442,661 + GFF1781 0.89 -0.7 442,661 + GFF1781 0.89 +1.0 442,661 + GFF1781 0.89 -0.2 442,661 + GFF1781 0.89 -0.6 442,661 + GFF1781 0.89 -1.3 442,662 - GFF1781 0.90 +0.4 442,662 - GFF1781 0.90 +1.8 442,662 - GFF1781 0.90 -1.2 442,662 - GFF1781 0.90 -0.1 442,664 - -0.1 442,664 - +1.0
Or see this region's nucleotide sequence