Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF175 and GFF176 overlap by 1 nucleotides GFF176 and GFF177 overlap by 4 nucleotides GFF177 and GFF178 are separated by 39 nucleotides
GFF175 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,295 to 206,960
GFF175
GFF176 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,960 to 207,619
GFF176
GFF177 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 207,616 to 208,386
GFF177
GFF178 - Mannonate dehydratase (EC 4.2.1.8), at 208,426 to 209,637
GFF178
Position (kb)
207
208
209 Strain fitness (log2 ratio)
-2
-1
0
1 at 206.844 kb on + strand, within GFF175 at 206.883 kb on + strand, within GFF175 at 206.883 kb on + strand, within GFF175 at 206.883 kb on + strand, within GFF175 at 206.883 kb on + strand, within GFF175 at 206.883 kb on + strand, within GFF175 at 206.884 kb on - strand, within GFF175 at 206.884 kb on - strand, within GFF175 at 206.884 kb on - strand, within GFF175 at 206.884 kb on - strand, within GFF175 at 206.884 kb on - strand, within GFF175 at 206.884 kb on - strand, within GFF175 at 206.884 kb on - strand, within GFF175 at 206.928 kb on + strand at 206.928 kb on + strand at 206.928 kb on + strand at 206.929 kb on - strand at 206.929 kb on - strand at 206.929 kb on - strand at 206.929 kb on - strand at 206.929 kb on - strand at 206.996 kb on + strand at 206.997 kb on - strand at 207.173 kb on + strand, within GFF176 at 207.173 kb on + strand, within GFF176 at 207.174 kb on - strand, within GFF176 at 207.185 kb on + strand, within GFF176 at 207.186 kb on - strand, within GFF176 at 207.186 kb on - strand, within GFF176 at 207.186 kb on - strand, within GFF176 at 207.186 kb on - strand, within GFF176 at 207.266 kb on + strand, within GFF176 at 207.267 kb on - strand, within GFF176 at 207.267 kb on - strand, within GFF176 at 207.548 kb on + strand, within GFF176 at 207.548 kb on + strand, within GFF176 at 207.549 kb on - strand, within GFF176 at 207.549 kb on - strand, within GFF176 at 207.591 kb on + strand at 207.591 kb on + strand at 207.591 kb on + strand at 207.664 kb on + strand at 207.664 kb on + strand at 207.665 kb on - strand at 207.665 kb on - strand at 207.665 kb on - strand at 207.665 kb on - strand at 207.685 kb on + strand at 207.685 kb on + strand at 207.685 kb on + strand at 207.685 kb on + strand at 207.686 kb on - strand at 208.170 kb on - strand, within GFF177 at 208.170 kb on - strand, within GFF177 at 208.418 kb on + strand at 208.418 kb on + strand at 208.418 kb on + strand at 208.418 kb on + strand at 208.419 kb on - strand at 208.562 kb on - strand, within GFF178 at 208.630 kb on + strand, within GFF178 at 208.630 kb on + strand, within GFF178 at 208.630 kb on + strand, within GFF178 at 208.631 kb on - strand, within GFF178 at 208.636 kb on + strand, within GFF178 at 208.636 kb on + strand, within GFF178 at 208.636 kb on + strand, within GFF178 at 208.636 kb on + strand, within GFF178 at 208.637 kb on - strand, within GFF178 at 208.637 kb on - strand, within GFF178 at 208.637 kb on - strand, within GFF178 at 208.637 kb on - strand, within GFF178 at 208.637 kb on - strand, within GFF178 at 208.637 kb on - strand, within GFF178 at 208.637 kb on - strand, within GFF178 at 208.649 kb on - strand, within GFF178 at 208.649 kb on - strand, within GFF178 at 208.741 kb on + strand, within GFF178 at 208.741 kb on + strand, within GFF178 at 208.742 kb on - strand, within GFF178 at 208.742 kb on - strand, within GFF178 at 208.742 kb on - strand, within GFF178 at 208.784 kb on - strand, within GFF178 at 208.784 kb on - strand, within GFF178 at 208.784 kb on - strand, within GFF178 at 208.837 kb on + strand, within GFF178 at 208.837 kb on + strand, within GFF178 at 208.837 kb on + strand, within GFF178 at 208.838 kb on - strand, within GFF178 at 208.852 kb on + strand, within GFF178 at 208.853 kb on - strand, within GFF178 at 208.853 kb on - strand, within GFF178 at 208.900 kb on + strand, within GFF178 at 208.900 kb on + strand, within GFF178 at 208.900 kb on + strand, within GFF178 at 208.900 kb on + strand, within GFF178 at 208.900 kb on + strand, within GFF178 at 208.901 kb on - strand, within GFF178 at 208.901 kb on - strand, within GFF178 at 208.901 kb on - strand, within GFF178 at 208.901 kb on - strand, within GFF178 at 208.901 kb on - strand, within GFF178 at 208.927 kb on + strand, within GFF178 at 208.927 kb on + strand, within GFF178 at 208.928 kb on - strand, within GFF178 at 208.981 kb on + strand, within GFF178 at 208.981 kb on + strand, within GFF178 at 208.981 kb on + strand, within GFF178 at 208.981 kb on + strand, within GFF178 at 208.981 kb on + strand, within GFF178 at 208.982 kb on - strand, within GFF178 at 208.982 kb on - strand, within GFF178 at 208.982 kb on - strand, within GFF178 at 208.982 kb on - strand, within GFF178 at 208.982 kb on - strand, within GFF178 at 208.982 kb on - strand, within GFF178 at 209.338 kb on + strand, within GFF178 at 209.338 kb on + strand, within GFF178 at 209.338 kb on + strand, within GFF178 at 209.339 kb on - strand, within GFF178 at 209.339 kb on - strand, within GFF178 at 209.339 kb on - strand, within GFF178 at 209.339 kb on - strand, within GFF178
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 206,844 + GFF175 0.82 -0.2 206,883 + GFF175 0.88 -0.4 206,883 + GFF175 0.88 -0.2 206,883 + GFF175 0.88 -1.4 206,883 + GFF175 0.88 -1.4 206,883 + GFF175 0.88 -0.2 206,884 - GFF175 0.88 +0.1 206,884 - GFF175 0.88 -0.1 206,884 - GFF175 0.88 -0.1 206,884 - GFF175 0.88 -0.0 206,884 - GFF175 0.88 +0.5 206,884 - GFF175 0.88 -0.8 206,884 - GFF175 0.88 +0.2 206,928 + -0.0 206,928 + -1.0 206,928 + +0.3 206,929 - +0.1 206,929 - -1.0 206,929 - -1.3 206,929 - -0.5 206,929 - +0.6 206,996 + -1.4 206,997 - +0.1 207,173 + GFF176 0.32 -1.3 207,173 + GFF176 0.32 -1.5 207,174 - GFF176 0.32 -0.6 207,185 + GFF176 0.34 -0.7 207,186 - GFF176 0.34 +1.0 207,186 - GFF176 0.34 -0.0 207,186 - GFF176 0.34 -0.8 207,186 - GFF176 0.34 -0.1 207,266 + GFF176 0.46 +0.2 207,267 - GFF176 0.47 -0.2 207,267 - GFF176 0.47 -0.3 207,548 + GFF176 0.89 -0.3 207,548 + GFF176 0.89 -1.4 207,549 - GFF176 0.89 +0.4 207,549 - GFF176 0.89 +0.0 207,591 + -0.2 207,591 + +0.4 207,591 + -0.7 207,664 + -0.1 207,664 + +0.4 207,665 - +0.2 207,665 - -1.1 207,665 - +0.3 207,665 - -0.0 207,685 + +0.5 207,685 + -0.6 207,685 + -0.3 207,685 + +0.9 207,686 - +0.6 208,170 - GFF177 0.72 -0.6 208,170 - GFF177 0.72 -1.3 208,418 + -0.6 208,418 + -0.3 208,418 + -1.4 208,418 + -0.0 208,419 - -0.4 208,562 - GFF178 0.11 -0.2 208,630 + GFF178 0.17 -0.7 208,630 + GFF178 0.17 +1.6 208,630 + GFF178 0.17 -0.5 208,631 - GFF178 0.17 -1.1 208,636 + GFF178 0.17 -0.1 208,636 + GFF178 0.17 +0.3 208,636 + GFF178 0.17 -0.0 208,636 + GFF178 0.17 +1.0 208,637 - GFF178 0.17 +0.1 208,637 - GFF178 0.17 -0.2 208,637 - GFF178 0.17 -0.4 208,637 - GFF178 0.17 +1.0 208,637 - GFF178 0.17 -0.4 208,637 - GFF178 0.17 +1.2 208,637 - GFF178 0.17 +0.0 208,649 - GFF178 0.18 +0.5 208,649 - GFF178 0.18 -0.3 208,741 + GFF178 0.26 -1.1 208,741 + GFF178 0.26 -2.2 208,742 - GFF178 0.26 -0.5 208,742 - GFF178 0.26 +0.0 208,742 - GFF178 0.26 +1.6 208,784 - GFF178 0.30 -0.2 208,784 - GFF178 0.30 +0.5 208,784 - GFF178 0.30 -0.6 208,837 + GFF178 0.34 -0.7 208,837 + GFF178 0.34 +1.2 208,837 + GFF178 0.34 -2.0 208,838 - GFF178 0.34 +0.2 208,852 + GFF178 0.35 +0.1 208,853 - GFF178 0.35 +0.2 208,853 - GFF178 0.35 +0.5 208,900 + GFF178 0.39 -0.4 208,900 + GFF178 0.39 -0.1 208,900 + GFF178 0.39 -1.1 208,900 + GFF178 0.39 -0.8 208,900 + GFF178 0.39 +0.9 208,901 - GFF178 0.39 -1.6 208,901 - GFF178 0.39 +0.8 208,901 - GFF178 0.39 -0.1 208,901 - GFF178 0.39 -0.1 208,901 - GFF178 0.39 +0.9 208,927 + GFF178 0.41 +0.1 208,927 + GFF178 0.41 -0.8 208,928 - GFF178 0.41 +0.2 208,981 + GFF178 0.46 -1.1 208,981 + GFF178 0.46 +1.2 208,981 + GFF178 0.46 -0.7 208,981 + GFF178 0.46 -0.4 208,981 + GFF178 0.46 -0.7 208,982 - GFF178 0.46 +0.7 208,982 - GFF178 0.46 -1.6 208,982 - GFF178 0.46 +0.6 208,982 - GFF178 0.46 +0.3 208,982 - GFF178 0.46 +1.2 208,982 - GFF178 0.46 +0.2 209,338 + GFF178 0.75 -0.1 209,338 + GFF178 0.75 +0.2 209,338 + GFF178 0.75 -0.7 209,339 - GFF178 0.75 -0.4 209,339 - GFF178 0.75 -0.4 209,339 - GFF178 0.75 -0.1 209,339 - GFF178 0.75 -0.1
Or see this region's nucleotide sequence