Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1762 and GFF1763 overlap by 1 nucleotides GFF1763 and GFF1764 overlap by 7 nucleotides GFF1764 and GFF1765 are separated by 88 nucleotides
GFF1762 - no description, at 424,030 to 425,124
GFF1762
GFF1763 - HemK family modification methylase PA2179, at 425,124 to 426,077
GFF1763
GFF1764 - hypothetical protein, at 426,071 to 426,967
GFF1764
GFF1765 - putative membrane protein, at 427,056 to 428,234
GFF1765
Position (kb) 425
426
427 Strain fitness (log2 ratio) -1
0
1
2 at 424.577 kb on + strand, within GFF1762 at 424.577 kb on + strand, within GFF1762 at 424.578 kb on - strand, within GFF1762 at 424.578 kb on - strand, within GFF1762 at 424.631 kb on + strand, within GFF1762 at 424.631 kb on + strand, within GFF1762 at 424.664 kb on + strand, within GFF1762 at 424.665 kb on - strand, within GFF1762 at 424.709 kb on + strand, within GFF1762 at 424.709 kb on + strand, within GFF1762 at 424.709 kb on + strand, within GFF1762 at 424.710 kb on - strand, within GFF1762 at 424.910 kb on + strand, within GFF1762 at 425.126 kb on - strand at 425.191 kb on + strand at 425.192 kb on - strand at 425.192 kb on - strand at 425.242 kb on + strand, within GFF1763 at 425.242 kb on + strand, within GFF1763 at 425.243 kb on - strand, within GFF1763 at 425.243 kb on - strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.330 kb on - strand, within GFF1763 at 425.330 kb on - strand, within GFF1763 at 425.452 kb on + strand, within GFF1763 at 425.453 kb on - strand, within GFF1763 at 425.453 kb on - strand, within GFF1763 at 425.561 kb on - strand, within GFF1763 at 425.791 kb on + strand, within GFF1763 at 426.268 kb on - strand, within GFF1764 at 426.375 kb on + strand, within GFF1764 at 426.375 kb on + strand, within GFF1764 at 426.382 kb on - strand, within GFF1764 at 426.382 kb on - strand, within GFF1764 at 427.044 kb on + strand at 427.045 kb on - strand at 427.045 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 424,577 + GFF1762 0.50 +1.5 424,577 + GFF1762 0.50 -0.8 424,578 - GFF1762 0.50 +0.2 424,578 - GFF1762 0.50 -0.6 424,631 + GFF1762 0.55 +0.8 424,631 + GFF1762 0.55 +1.1 424,664 + GFF1762 0.58 -0.3 424,665 - GFF1762 0.58 +0.3 424,709 + GFF1762 0.62 -0.0 424,709 + GFF1762 0.62 +0.2 424,709 + GFF1762 0.62 -0.9 424,710 - GFF1762 0.62 -0.4 424,910 + GFF1762 0.80 -0.4 425,126 - -0.8 425,191 + +0.1 425,192 - -0.4 425,192 - +0.2 425,242 + GFF1763 0.12 +0.8 425,242 + GFF1763 0.12 -0.1 425,243 - GFF1763 0.12 -0.9 425,243 - GFF1763 0.12 +0.0 425,329 + GFF1763 0.21 -0.1 425,329 + GFF1763 0.21 +1.8 425,329 + GFF1763 0.21 -0.1 425,329 + GFF1763 0.21 +0.2 425,329 + GFF1763 0.21 +0.4 425,330 - GFF1763 0.22 +0.2 425,330 - GFF1763 0.22 -0.4 425,452 + GFF1763 0.34 -1.5 425,453 - GFF1763 0.34 -1.1 425,453 - GFF1763 0.34 -0.9 425,561 - GFF1763 0.46 -0.3 425,791 + GFF1763 0.70 -0.5 426,268 - GFF1764 0.22 -0.4 426,375 + GFF1764 0.34 +0.0 426,375 + GFF1764 0.34 -0.2 426,382 - GFF1764 0.35 +0.2 426,382 - GFF1764 0.35 -1.2 427,044 + -0.2 427,045 - +1.8 427,045 - -1.2
Or see this region's nucleotide sequence