Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1718 and GFF1719 are separated by 0 nucleotides GFF1719 and GFF1720 are separated by 175 nucleotides
GFF1718 - Malate dehydrogenase (EC 1.1.1.37), at 365,837 to 366,760
GFF1718
GFF1719 - Transcriptional regulator, LysR family, at 366,761 to 367,684
GFF1719
GFF1720 - Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2, at 367,860 to 371,435
GFF1720
Position (kb) 366
367
368 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 365.776 kb on + strand at 365.776 kb on + strand at 365.777 kb on - strand at 365.777 kb on - strand at 365.795 kb on + strand at 365.942 kb on + strand, within GFF1718 at 365.942 kb on + strand, within GFF1718 at 365.942 kb on + strand, within GFF1718 at 365.943 kb on - strand, within GFF1718 at 365.943 kb on - strand, within GFF1718 at 365.943 kb on - strand, within GFF1718 at 366.098 kb on + strand, within GFF1718 at 366.098 kb on + strand, within GFF1718 at 366.099 kb on - strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.131 kb on + strand, within GFF1718 at 366.132 kb on - strand, within GFF1718 at 366.132 kb on - strand, within GFF1718 at 366.132 kb on - strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.152 kb on + strand, within GFF1718 at 366.153 kb on - strand, within GFF1718 at 366.153 kb on - strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.155 kb on + strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.156 kb on - strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.248 kb on + strand, within GFF1718 at 366.249 kb on - strand, within GFF1718 at 366.249 kb on - strand, within GFF1718 at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.673 kb on + strand at 366.674 kb on - strand at 366.674 kb on - strand at 366.674 kb on - strand at 366.674 kb on - strand at 366.758 kb on + strand at 366.758 kb on + strand at 366.758 kb on + strand at 366.759 kb on - strand at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.858 kb on + strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 366.859 kb on - strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.547 kb on + strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.548 kb on - strand, within GFF1719 at 367.728 kb on + strand at 367.728 kb on + strand at 367.729 kb on - strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.748 kb on + strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.749 kb on - strand at 367.752 kb on + strand at 367.752 kb on + strand at 367.753 kb on - strand at 367.753 kb on - strand at 367.814 kb on + strand at 367.814 kb on + strand at 367.814 kb on + strand at 367.814 kb on + strand at 367.814 kb on + strand at 367.814 kb on + strand at 367.814 kb on + strand at 367.814 kb on + strand at 367.814 kb on + strand at 367.815 kb on - strand at 367.815 kb on - strand at 367.815 kb on - strand at 367.815 kb on - strand at 367.815 kb on - strand at 367.815 kb on - strand at 367.815 kb on - strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.818 kb on + strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.819 kb on - strand at 367.827 kb on - strand at 367.920 kb on + strand at 367.921 kb on - strand at 367.921 kb on - strand at 368.100 kb on + strand at 368.100 kb on + strand at 368.100 kb on + strand at 368.100 kb on + strand at 368.101 kb on - strand at 368.101 kb on - strand at 368.101 kb on - strand at 368.211 kb on + strand at 368.211 kb on + strand at 368.211 kb on + strand at 368.212 kb on - strand at 368.212 kb on - strand at 368.212 kb on - strand at 368.445 kb on + strand, within GFF1720 at 368.446 kb on - strand, within GFF1720
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 365,776 + +0.4 365,776 + -0.3 365,777 - +1.0 365,777 - +0.5 365,795 + -0.2 365,942 + GFF1718 0.11 -0.0 365,942 + GFF1718 0.11 -1.0 365,942 + GFF1718 0.11 -0.2 365,943 - GFF1718 0.11 +0.1 365,943 - GFF1718 0.11 -0.9 365,943 - GFF1718 0.11 -0.4 366,098 + GFF1718 0.28 -1.1 366,098 + GFF1718 0.28 +0.9 366,099 - GFF1718 0.28 -0.1 366,131 + GFF1718 0.32 -0.2 366,131 + GFF1718 0.32 +0.2 366,131 + GFF1718 0.32 +0.4 366,131 + GFF1718 0.32 +0.7 366,132 - GFF1718 0.32 -0.9 366,132 - GFF1718 0.32 -0.3 366,132 - GFF1718 0.32 -0.2 366,152 + GFF1718 0.34 -0.6 366,152 + GFF1718 0.34 -0.5 366,152 + GFF1718 0.34 +0.5 366,152 + GFF1718 0.34 -0.6 366,153 - GFF1718 0.34 +0.8 366,153 - GFF1718 0.34 +0.2 366,155 + GFF1718 0.34 -0.2 366,155 + GFF1718 0.34 -1.6 366,155 + GFF1718 0.34 +0.2 366,155 + GFF1718 0.34 +0.6 366,155 + GFF1718 0.34 -0.4 366,155 + GFF1718 0.34 -1.1 366,156 - GFF1718 0.35 -0.7 366,156 - GFF1718 0.35 -1.9 366,156 - GFF1718 0.35 +0.2 366,156 - GFF1718 0.35 -0.5 366,156 - GFF1718 0.35 -1.4 366,156 - GFF1718 0.35 -0.9 366,156 - GFF1718 0.35 -0.9 366,156 - GFF1718 0.35 +0.4 366,248 + GFF1718 0.44 -0.7 366,248 + GFF1718 0.44 -0.7 366,248 + GFF1718 0.44 +0.9 366,248 + GFF1718 0.44 -1.0 366,249 - GFF1718 0.45 +0.2 366,249 - GFF1718 0.45 -0.4 366,673 + +0.6 366,673 + +0.5 366,673 + +0.0 366,673 + -0.7 366,673 + -1.5 366,673 + -1.3 366,673 + +0.7 366,673 + -1.8 366,674 - -0.1 366,674 - -1.4 366,674 - -1.1 366,674 - -1.6 366,758 + -0.1 366,758 + +0.0 366,758 + -1.4 366,759 - -0.5 366,858 + GFF1719 0.10 -0.1 366,858 + GFF1719 0.10 -0.7 366,858 + GFF1719 0.10 +0.0 366,858 + GFF1719 0.10 -1.7 366,858 + GFF1719 0.10 -0.7 366,858 + GFF1719 0.10 -2.1 366,858 + GFF1719 0.10 -0.4 366,858 + GFF1719 0.10 -0.4 366,858 + GFF1719 0.10 +0.2 366,858 + GFF1719 0.10 +0.4 366,858 + GFF1719 0.10 +1.5 366,858 + GFF1719 0.10 -0.3 366,858 + GFF1719 0.10 -0.7 366,858 + GFF1719 0.10 +0.8 366,859 - GFF1719 0.11 +0.8 366,859 - GFF1719 0.11 -0.1 366,859 - GFF1719 0.11 -0.6 366,859 - GFF1719 0.11 +0.8 366,859 - GFF1719 0.11 -0.8 366,859 - GFF1719 0.11 -1.1 366,859 - GFF1719 0.11 -0.6 366,859 - GFF1719 0.11 -0.7 366,859 - GFF1719 0.11 -3.1 367,547 + GFF1719 0.85 +0.8 367,547 + GFF1719 0.85 +0.6 367,547 + GFF1719 0.85 +0.8 367,547 + GFF1719 0.85 -0.2 367,547 + GFF1719 0.85 +0.3 367,547 + GFF1719 0.85 -0.8 367,547 + GFF1719 0.85 +0.1 367,547 + GFF1719 0.85 +1.1 367,547 + GFF1719 0.85 -0.3 367,548 - GFF1719 0.85 +0.1 367,548 - GFF1719 0.85 +0.2 367,548 - GFF1719 0.85 +1.0 367,548 - GFF1719 0.85 +1.9 367,548 - GFF1719 0.85 +0.4 367,548 - GFF1719 0.85 +0.0 367,548 - GFF1719 0.85 +0.1 367,548 - GFF1719 0.85 -0.4 367,548 - GFF1719 0.85 +0.1 367,548 - GFF1719 0.85 +0.4 367,548 - GFF1719 0.85 -1.3 367,548 - GFF1719 0.85 +0.2 367,548 - GFF1719 0.85 +0.2 367,728 + +1.5 367,728 + +0.2 367,729 - +0.0 367,748 + -2.1 367,748 + -0.7 367,748 + -1.1 367,748 + -0.4 367,748 + +0.5 367,748 + -0.1 367,748 + +0.6 367,748 + -0.3 367,749 - +0.4 367,749 - -0.3 367,749 - +0.3 367,749 - -0.0 367,749 - -0.3 367,749 - -0.2 367,749 - +1.2 367,749 - -0.8 367,749 - -0.3 367,752 + +0.9 367,752 + -0.8 367,753 - +0.2 367,753 - -0.3 367,814 + -0.4 367,814 + -0.9 367,814 + -0.6 367,814 + -0.9 367,814 + +0.8 367,814 + +0.6 367,814 + -0.7 367,814 + -0.7 367,814 + +1.0 367,815 - -0.4 367,815 - -1.2 367,815 - +1.8 367,815 - -0.5 367,815 - -0.1 367,815 - +0.5 367,815 - +0.1 367,818 + -0.2 367,818 + -0.8 367,818 + +0.2 367,818 + -0.7 367,818 + +0.0 367,818 + -2.1 367,818 + -0.4 367,818 + -0.4 367,818 + -0.9 367,818 + -0.9 367,818 + -0.3 367,818 + -0.4 367,818 + -0.4 367,818 + -1.2 367,818 + -0.4 367,818 + +0.3 367,818 + -0.4 367,818 + -0.6 367,819 - -0.0 367,819 - +0.4 367,819 - +0.0 367,819 - +0.1 367,819 - -0.2 367,819 - -1.6 367,819 - -0.6 367,819 - +1.1 367,819 - -0.2 367,819 - -0.2 367,819 - -1.1 367,819 - -0.2 367,819 - +0.9 367,819 - -0.5 367,819 - +1.8 367,819 - -0.8 367,819 - -0.5 367,819 - +0.3 367,819 - +2.3 367,819 - +0.2 367,827 - -0.2 367,920 + -0.2 367,921 - -0.3 367,921 - -0.4 368,100 + +0.4 368,100 + +0.1 368,100 + -1.6 368,100 + -0.4 368,101 - -0.2 368,101 - -1.3 368,101 - -0.7 368,211 + -0.4 368,211 + -0.9 368,211 + -0.2 368,212 - -0.3 368,212 - -0.1 368,212 - +0.5 368,445 + GFF1720 0.16 -0.4 368,446 - GFF1720 0.16 -0.1
Or see this region's nucleotide sequence