Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1706 and GFF1707 are separated by 51 nucleotides GFF1707 and GFF1708 are separated by 1 nucleotides GFF1708 and GFF1709 are separated by 347 nucleotides GFF1709 and GFF1710 are separated by 11 nucleotides
GFF1706 - ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate) / ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate), at 352,413 to 354,155
GFF1706
GFF1707 - no description, at 354,207 to 354,416
GFF1707
GFF1708 - no description, at 354,418 to 354,618
GFF1708
GFF1709 - no description, at 354,966 to 355,295
GFF1709
GFF1710 - hypothetical protein, at 355,307 to 356,326
GFF1710
Position (kb) 354
355 Strain fitness (log2 ratio) -2
-1
0
1
2 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.474 kb on - strand, within GFF1706 at 353.474 kb on - strand, within GFF1706 at 353.474 kb on - strand, within GFF1706 at 353.474 kb on - strand, within GFF1706 at 353.474 kb on - strand, within GFF1706 at 353.474 kb on - strand, within GFF1706 at 353.474 kb on - strand, within GFF1706 at 353.641 kb on + strand, within GFF1706 at 353.641 kb on + strand, within GFF1706 at 353.641 kb on + strand, within GFF1706 at 353.641 kb on + strand, within GFF1706 at 353.642 kb on - strand, within GFF1706 at 353.642 kb on - strand, within GFF1706 at 353.642 kb on - strand, within GFF1706 at 353.692 kb on + strand, within GFF1706 at 353.692 kb on + strand, within GFF1706 at 353.692 kb on + strand, within GFF1706 at 353.692 kb on + strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.894 kb on - strand, within GFF1706 at 353.965 kb on + strand, within GFF1706 at 353.966 kb on - strand, within GFF1706 at 353.966 kb on - strand, within GFF1706 at 353.966 kb on - strand, within GFF1706 at 353.968 kb on + strand, within GFF1706 at 353.968 kb on + strand, within GFF1706 at 353.969 kb on - strand, within GFF1706 at 354.147 kb on - strand at 354.147 kb on - strand at 354.229 kb on + strand, within GFF1707 at 354.230 kb on - strand, within GFF1707 at 354.230 kb on - strand, within GFF1707 at 354.230 kb on - strand, within GFF1707 at 354.424 kb on + strand at 354.591 kb on + strand, within GFF1708 at 354.591 kb on + strand, within GFF1708 at 354.591 kb on + strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.619 kb on - strand at 354.619 kb on - strand at 354.619 kb on - strand at 354.619 kb on - strand at 354.671 kb on + strand at 354.672 kb on - strand at 354.749 kb on + strand at 354.750 kb on - strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.973 kb on - strand at 354.973 kb on - strand at 355.145 kb on + strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.396 kb on + strand at 355.397 kb on - strand at 355.410 kb on + strand, within GFF1710 at 355.410 kb on + strand, within GFF1710 at 355.410 kb on + strand, within GFF1710 at 355.410 kb on + strand, within GFF1710 at 355.410 kb on + strand, within GFF1710 at 355.410 kb on + strand, within GFF1710 at 355.411 kb on - strand, within GFF1710 at 355.411 kb on - strand, within GFF1710 at 355.575 kb on + strand, within GFF1710 at 355.576 kb on - strand, within GFF1710
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 353,473 + GFF1706 0.61 -0.2 353,473 + GFF1706 0.61 -0.3 353,473 + GFF1706 0.61 -1.3 353,473 + GFF1706 0.61 -1.4 353,473 + GFF1706 0.61 +0.2 353,473 + GFF1706 0.61 -1.2 353,473 + GFF1706 0.61 -0.9 353,473 + GFF1706 0.61 -0.7 353,473 + GFF1706 0.61 -0.1 353,473 + GFF1706 0.61 -0.4 353,474 - GFF1706 0.61 +0.0 353,474 - GFF1706 0.61 -0.5 353,474 - GFF1706 0.61 -0.3 353,474 - GFF1706 0.61 +0.2 353,474 - GFF1706 0.61 -0.6 353,474 - GFF1706 0.61 +0.3 353,474 - GFF1706 0.61 -1.8 353,641 + GFF1706 0.70 -0.7 353,641 + GFF1706 0.70 -0.9 353,641 + GFF1706 0.70 -1.2 353,641 + GFF1706 0.70 -0.1 353,642 - GFF1706 0.71 -0.9 353,642 - GFF1706 0.71 -0.8 353,642 - GFF1706 0.71 -2.1 353,692 + GFF1706 0.73 +0.3 353,692 + GFF1706 0.73 -0.6 353,692 + GFF1706 0.73 -1.1 353,692 + GFF1706 0.73 -0.8 353,693 - GFF1706 0.73 -0.7 353,693 - GFF1706 0.73 -1.6 353,693 - GFF1706 0.73 -1.2 353,693 - GFF1706 0.73 +0.3 353,693 - GFF1706 0.73 +0.8 353,693 - GFF1706 0.73 +0.0 353,693 - GFF1706 0.73 -0.2 353,693 - GFF1706 0.73 +0.3 353,693 - GFF1706 0.73 +0.2 353,693 - GFF1706 0.73 -0.2 353,693 - GFF1706 0.73 -0.2 353,894 - GFF1706 0.85 -0.5 353,965 + GFF1706 0.89 +0.5 353,966 - GFF1706 0.89 +0.4 353,966 - GFF1706 0.89 +0.2 353,966 - GFF1706 0.89 +0.2 353,968 + GFF1706 0.89 +0.2 353,968 + GFF1706 0.89 +0.3 353,969 - GFF1706 0.89 -1.5 354,147 - -0.3 354,147 - -0.8 354,229 + GFF1707 0.10 -0.8 354,230 - GFF1707 0.11 -0.5 354,230 - GFF1707 0.11 -0.1 354,230 - GFF1707 0.11 +0.2 354,424 + +0.2 354,591 + GFF1708 0.86 -0.1 354,591 + GFF1708 0.86 +1.8 354,591 + GFF1708 0.86 +0.6 354,592 - GFF1708 0.87 +0.3 354,592 - GFF1708 0.87 +0.3 354,592 - GFF1708 0.87 -0.1 354,592 - GFF1708 0.87 +0.5 354,618 + -0.6 354,618 + -0.6 354,618 + -0.7 354,618 + -0.1 354,618 + -0.1 354,618 + +0.4 354,618 + -0.5 354,618 + -0.8 354,618 + -0.0 354,618 + +1.8 354,619 - -0.3 354,619 - -0.6 354,619 - +0.4 354,619 - +1.1 354,671 + +1.4 354,672 - -0.1 354,749 + +0.5 354,750 - -0.2 354,849 + -0.4 354,849 + +1.3 354,849 + -1.2 354,849 + +0.3 354,849 + +0.2 354,849 + -0.9 354,849 + -0.2 354,849 + +0.1 354,850 - -2.1 354,850 - -1.9 354,850 - -0.6 354,850 - -0.5 354,850 - -0.6 354,973 - -0.0 354,973 - -0.8 355,145 + GFF1709 0.54 -0.9 355,146 - GFF1709 0.55 -0.5 355,146 - GFF1709 0.55 +0.2 355,146 - GFF1709 0.55 -0.6 355,146 - GFF1709 0.55 +0.9 355,146 - GFF1709 0.55 -0.3 355,146 - GFF1709 0.55 -1.3 355,396 + +1.0 355,397 - -0.3 355,410 + GFF1710 0.10 +0.8 355,410 + GFF1710 0.10 +0.6 355,410 + GFF1710 0.10 -0.4 355,410 + GFF1710 0.10 -0.0 355,410 + GFF1710 0.10 -1.5 355,410 + GFF1710 0.10 +0.1 355,411 - GFF1710 0.10 -0.8 355,411 - GFF1710 0.10 -0.1 355,575 + GFF1710 0.26 -1.1 355,576 - GFF1710 0.26 -0.1
Or see this region's nucleotide sequence