Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF167 and GFF168 overlap by 4 nucleotides GFF168 and GFF169 overlap by 4 nucleotides GFF169 and GFF170 overlap by 11 nucleotides
GFF167 - Two-component system sensor histidine kinase, at 195,697 to 199,197
GFF167
GFF168 - MCP methyltransferase, CheR-type, at 199,194 to 200,060
GFF168
GFF169 - Protein-glutamate methylesterase (EC 3.1.1.61), at 200,057 to 200,659
GFF169
GFF170 - Two-component system sensor histidine kinase/response regulator hybrid, at 200,649 to 201,872
GFF170
Position (kb) 200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 199.120 kb on + strand at 199.120 kb on + strand at 199.120 kb on + strand at 199.120 kb on + strand at 199.120 kb on + strand at 199.120 kb on + strand at 199.120 kb on + strand at 199.121 kb on - strand at 199.121 kb on - strand at 199.121 kb on - strand at 199.290 kb on + strand, within GFF168 at 199.290 kb on + strand, within GFF168 at 199.291 kb on - strand, within GFF168 at 199.291 kb on - strand, within GFF168 at 199.291 kb on - strand, within GFF168 at 199.299 kb on + strand, within GFF168 at 199.299 kb on + strand, within GFF168 at 199.300 kb on - strand, within GFF168 at 199.305 kb on + strand, within GFF168 at 199.305 kb on + strand, within GFF168 at 199.305 kb on + strand, within GFF168 at 199.305 kb on + strand, within GFF168 at 199.306 kb on - strand, within GFF168 at 199.306 kb on - strand, within GFF168 at 199.306 kb on - strand, within GFF168 at 199.307 kb on - strand, within GFF168 at 199.320 kb on + strand, within GFF168 at 199.321 kb on - strand, within GFF168 at 199.486 kb on - strand, within GFF168 at 199.531 kb on - strand, within GFF168 at 199.531 kb on - strand, within GFF168 at 199.635 kb on + strand, within GFF168 at 199.635 kb on + strand, within GFF168 at 199.710 kb on + strand, within GFF168 at 199.710 kb on + strand, within GFF168 at 199.710 kb on + strand, within GFF168 at 199.722 kb on + strand, within GFF168 at 199.723 kb on - strand, within GFF168 at 199.758 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.762 kb on - strand, within GFF168 at 199.762 kb on - strand, within GFF168 at 199.773 kb on + strand, within GFF168 at 199.774 kb on - strand, within GFF168 at 199.893 kb on + strand, within GFF168 at 199.894 kb on - strand, within GFF168 at 200.043 kb on + strand at 200.044 kb on - strand at 200.175 kb on + strand, within GFF169 at 200.175 kb on + strand, within GFF169 at 200.175 kb on + strand, within GFF169 at 200.175 kb on + strand, within GFF169 at 200.175 kb on + strand, within GFF169 at 200.175 kb on + strand, within GFF169 at 200.176 kb on - strand, within GFF169 at 200.176 kb on - strand, within GFF169 at 200.176 kb on - strand, within GFF169 at 200.303 kb on + strand, within GFF169 at 200.303 kb on + strand, within GFF169 at 200.303 kb on + strand, within GFF169 at 200.303 kb on + strand, within GFF169 at 200.304 kb on - strand, within GFF169 at 200.304 kb on - strand, within GFF169 at 200.304 kb on - strand, within GFF169 at 200.321 kb on + strand, within GFF169 at 200.322 kb on - strand, within GFF169 at 200.322 kb on - strand, within GFF169 at 200.322 kb on - strand, within GFF169 at 200.334 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.472 kb on - strand, within GFF169 at 200.472 kb on - strand, within GFF169 at 200.472 kb on - strand, within GFF169 at 200.526 kb on + strand, within GFF169 at 200.526 kb on + strand, within GFF169 at 200.526 kb on + strand, within GFF169 at 200.527 kb on - strand, within GFF169 at 200.594 kb on + strand, within GFF169 at 200.594 kb on + strand, within GFF169 at 200.594 kb on + strand, within GFF169 at 200.594 kb on + strand, within GFF169 at 200.595 kb on - strand, within GFF169 at 200.595 kb on - strand, within GFF169 at 200.595 kb on - strand, within GFF169 at 200.595 kb on - strand, within GFF169 at 200.931 kb on + strand, within GFF170 at 200.931 kb on + strand, within GFF170 at 200.932 kb on - strand, within GFF170 at 200.932 kb on - strand, within GFF170 at 200.932 kb on - strand, within GFF170 at 200.946 kb on + strand, within GFF170 at 200.947 kb on - strand, within GFF170 at 201.149 kb on + strand, within GFF170 at 201.149 kb on + strand, within GFF170 at 201.149 kb on + strand, within GFF170 at 201.149 kb on + strand, within GFF170 at 201.150 kb on - strand, within GFF170 at 201.210 kb on + strand, within GFF170 at 201.211 kb on - strand, within GFF170 at 201.211 kb on - strand, within GFF170
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 199,120 + -0.4 199,120 + +0.2 199,120 + +1.2 199,120 + +0.8 199,120 + -1.1 199,120 + -0.0 199,120 + -0.5 199,121 - -1.3 199,121 - -0.3 199,121 - +0.2 199,290 + GFF168 0.11 +1.2 199,290 + GFF168 0.11 -2.5 199,291 - GFF168 0.11 -1.4 199,291 - GFF168 0.11 -2.0 199,291 - GFF168 0.11 +0.5 199,299 + GFF168 0.12 +1.2 199,299 + GFF168 0.12 +0.6 199,300 - GFF168 0.12 -2.1 199,305 + GFF168 0.13 -0.5 199,305 + GFF168 0.13 -0.5 199,305 + GFF168 0.13 +0.6 199,305 + GFF168 0.13 +1.8 199,306 - GFF168 0.13 -1.6 199,306 - GFF168 0.13 -0.0 199,306 - GFF168 0.13 -2.4 199,307 - GFF168 0.13 -0.5 199,320 + GFF168 0.15 -0.7 199,321 - GFF168 0.15 -0.8 199,486 - GFF168 0.34 +1.2 199,531 - GFF168 0.39 -0.2 199,531 - GFF168 0.39 -2.4 199,635 + GFF168 0.51 -1.4 199,635 + GFF168 0.51 -0.6 199,710 + GFF168 0.60 -0.9 199,710 + GFF168 0.60 -0.8 199,710 + GFF168 0.60 -1.8 199,722 + GFF168 0.61 -0.2 199,723 - GFF168 0.61 -3.0 199,758 + GFF168 0.65 -0.3 199,761 + GFF168 0.65 -0.8 199,761 + GFF168 0.65 -2.0 199,761 + GFF168 0.65 +0.5 199,761 + GFF168 0.65 +0.6 199,761 + GFF168 0.65 +0.2 199,761 + GFF168 0.65 -1.0 199,761 + GFF168 0.65 +0.6 199,761 + GFF168 0.65 -1.6 199,762 - GFF168 0.66 -1.0 199,762 - GFF168 0.66 +2.2 199,773 + GFF168 0.67 -1.5 199,774 - GFF168 0.67 -2.1 199,893 + GFF168 0.81 -0.4 199,894 - GFF168 0.81 -0.4 200,043 + -0.0 200,044 - -0.0 200,175 + GFF169 0.20 -2.1 200,175 + GFF169 0.20 +0.5 200,175 + GFF169 0.20 +1.9 200,175 + GFF169 0.20 -1.8 200,175 + GFF169 0.20 -0.9 200,175 + GFF169 0.20 -2.2 200,176 - GFF169 0.20 -1.1 200,176 - GFF169 0.20 -0.1 200,176 - GFF169 0.20 -2.0 200,303 + GFF169 0.41 -0.6 200,303 + GFF169 0.41 -1.7 200,303 + GFF169 0.41 +0.0 200,303 + GFF169 0.41 -2.8 200,304 - GFF169 0.41 -0.7 200,304 - GFF169 0.41 -0.2 200,304 - GFF169 0.41 -2.2 200,321 + GFF169 0.44 -1.4 200,322 - GFF169 0.44 -1.6 200,322 - GFF169 0.44 -1.3 200,322 - GFF169 0.44 -0.7 200,334 + GFF169 0.46 -0.7 200,471 + GFF169 0.69 -1.6 200,471 + GFF169 0.69 +0.2 200,471 + GFF169 0.69 -0.9 200,471 + GFF169 0.69 -1.7 200,471 + GFF169 0.69 -2.3 200,471 + GFF169 0.69 -0.0 200,471 + GFF169 0.69 -0.6 200,471 + GFF169 0.69 -1.8 200,472 - GFF169 0.69 -0.1 200,472 - GFF169 0.69 -0.8 200,472 - GFF169 0.69 -1.1 200,526 + GFF169 0.78 -1.4 200,526 + GFF169 0.78 -1.1 200,526 + GFF169 0.78 -1.1 200,527 - GFF169 0.78 -1.4 200,594 + GFF169 0.89 -1.0 200,594 + GFF169 0.89 -0.8 200,594 + GFF169 0.89 +0.2 200,594 + GFF169 0.89 -1.1 200,595 - GFF169 0.89 +1.9 200,595 - GFF169 0.89 -0.2 200,595 - GFF169 0.89 -1.3 200,595 - GFF169 0.89 -0.6 200,931 + GFF170 0.23 -0.4 200,931 + GFF170 0.23 -0.3 200,932 - GFF170 0.23 +0.3 200,932 - GFF170 0.23 +0.1 200,932 - GFF170 0.23 -0.1 200,946 + GFF170 0.24 +0.2 200,947 - GFF170 0.24 +0.8 201,149 + GFF170 0.41 +1.2 201,149 + GFF170 0.41 +0.2 201,149 + GFF170 0.41 +0.5 201,149 + GFF170 0.41 -1.1 201,150 - GFF170 0.41 +0.6 201,210 + GFF170 0.46 +1.2 201,211 - GFF170 0.46 -1.1 201,211 - GFF170 0.46 +0.1
Or see this region's nucleotide sequence