Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1597 and GFF1598 are separated by 171 nucleotides GFF1598 and GFF1599 overlap by 4 nucleotides GFF1599 and GFF1600 overlap by 4 nucleotides
GFF1597 - Acetolactate synthase large subunit (EC 2.2.1.6), at 194,770 to 196,578
GFF1597
GFF1598 - no description, at 196,750 to 197,148
GFF1598
GFF1599 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 197,145 to 198,116
GFF1599
GFF1600 - Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1), at 198,113 to 199,000
GFF1600
Position (kb) 196
197
198 Strain fitness (log2 ratio) -2
-1
0
1
2 at 195.860 kb on + strand, within GFF1597 at 195.860 kb on + strand, within GFF1597 at 195.860 kb on + strand, within GFF1597 at 195.861 kb on - strand, within GFF1597 at 195.861 kb on - strand, within GFF1597 at 195.866 kb on + strand, within GFF1597 at 195.866 kb on + strand, within GFF1597 at 195.866 kb on + strand, within GFF1597 at 195.866 kb on + strand, within GFF1597 at 195.866 kb on + strand, within GFF1597 at 195.866 kb on + strand, within GFF1597 at 195.867 kb on - strand, within GFF1597 at 195.867 kb on - strand, within GFF1597 at 195.867 kb on - strand, within GFF1597 at 195.941 kb on + strand, within GFF1597 at 195.941 kb on + strand, within GFF1597 at 195.941 kb on + strand, within GFF1597 at 195.941 kb on + strand, within GFF1597 at 195.942 kb on - strand, within GFF1597 at 195.942 kb on - strand, within GFF1597 at 195.942 kb on - strand, within GFF1597 at 195.942 kb on - strand, within GFF1597 at 195.942 kb on - strand, within GFF1597 at 196.223 kb on + strand, within GFF1597 at 196.224 kb on - strand, within GFF1597 at 196.391 kb on + strand, within GFF1597 at 196.391 kb on + strand, within GFF1597 at 196.391 kb on + strand, within GFF1597 at 196.392 kb on - strand, within GFF1597 at 196.403 kb on - strand at 196.403 kb on - strand at 196.583 kb on + strand at 196.584 kb on - strand at 196.584 kb on - strand at 196.584 kb on - strand at 196.605 kb on + strand at 196.609 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.751 kb on + strand at 196.752 kb on - strand at 196.752 kb on - strand at 196.752 kb on - strand at 196.752 kb on - strand at 196.826 kb on - strand, within GFF1598 at 197.012 kb on + strand, within GFF1598 at 197.012 kb on + strand, within GFF1598 at 197.013 kb on - strand, within GFF1598 at 197.431 kb on + strand, within GFF1599 at 197.461 kb on + strand, within GFF1599 at 197.461 kb on + strand, within GFF1599 at 197.461 kb on + strand, within GFF1599 at 197.462 kb on - strand, within GFF1599 at 197.462 kb on - strand, within GFF1599 at 197.500 kb on + strand, within GFF1599 at 197.518 kb on + strand, within GFF1599 at 197.518 kb on + strand, within GFF1599 at 197.518 kb on + strand, within GFF1599 at 197.518 kb on + strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.717 kb on - strand, within GFF1599 at 197.860 kb on + strand, within GFF1599 at 197.887 kb on + strand, within GFF1599 at 197.983 kb on + strand, within GFF1599 at 197.984 kb on - strand, within GFF1599 at 197.984 kb on - strand, within GFF1599 at 197.999 kb on - strand, within GFF1599 at 197.999 kb on - strand, within GFF1599 at 197.999 kb on - strand, within GFF1599 at 197.999 kb on - strand, within GFF1599 at 197.999 kb on - strand, within GFF1599 at 198.073 kb on + strand at 198.073 kb on + strand at 198.074 kb on - strand at 198.074 kb on - strand at 198.074 kb on - strand at 198.106 kb on + strand at 198.106 kb on + strand at 198.107 kb on - strand at 198.107 kb on - strand at 198.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 195,860 + GFF1597 0.60 -0.8 195,860 + GFF1597 0.60 -0.5 195,860 + GFF1597 0.60 -0.7 195,861 - GFF1597 0.60 +0.2 195,861 - GFF1597 0.60 -0.3 195,866 + GFF1597 0.61 -0.8 195,866 + GFF1597 0.61 -0.9 195,866 + GFF1597 0.61 +0.0 195,866 + GFF1597 0.61 -1.4 195,866 + GFF1597 0.61 -0.9 195,866 + GFF1597 0.61 +0.4 195,867 - GFF1597 0.61 -0.1 195,867 - GFF1597 0.61 -2.5 195,867 - GFF1597 0.61 -0.3 195,941 + GFF1597 0.65 +0.5 195,941 + GFF1597 0.65 +0.1 195,941 + GFF1597 0.65 +0.1 195,941 + GFF1597 0.65 -0.2 195,942 - GFF1597 0.65 +0.3 195,942 - GFF1597 0.65 +0.5 195,942 - GFF1597 0.65 +0.0 195,942 - GFF1597 0.65 +0.5 195,942 - GFF1597 0.65 -0.6 196,223 + GFF1597 0.80 -0.6 196,224 - GFF1597 0.80 +0.1 196,391 + GFF1597 0.90 -0.9 196,391 + GFF1597 0.90 -0.3 196,391 + GFF1597 0.90 -0.3 196,392 - GFF1597 0.90 -1.2 196,403 - -0.3 196,403 - -0.6 196,583 + +0.3 196,584 - -0.2 196,584 - -0.8 196,584 - -0.2 196,605 + +0.7 196,609 + -1.7 196,733 + -0.3 196,733 + +1.7 196,751 + -1.0 196,752 - +0.3 196,752 - -0.8 196,752 - -0.8 196,752 - -0.3 196,826 - GFF1598 0.19 -0.3 197,012 + GFF1598 0.66 +1.0 197,012 + GFF1598 0.66 +1.3 197,013 - GFF1598 0.66 -0.1 197,431 + GFF1599 0.29 -0.7 197,461 + GFF1599 0.33 -0.8 197,461 + GFF1599 0.33 +0.3 197,461 + GFF1599 0.33 +0.3 197,462 - GFF1599 0.33 +0.7 197,462 - GFF1599 0.33 -0.1 197,500 + GFF1599 0.37 -1.1 197,518 + GFF1599 0.38 +0.1 197,518 + GFF1599 0.38 -0.5 197,518 + GFF1599 0.38 +0.4 197,518 + GFF1599 0.38 -0.7 197,519 - GFF1599 0.38 +0.4 197,519 - GFF1599 0.38 -0.7 197,519 - GFF1599 0.38 -0.2 197,519 - GFF1599 0.38 -0.3 197,519 - GFF1599 0.38 +0.1 197,519 - GFF1599 0.38 -0.4 197,519 - GFF1599 0.38 -0.6 197,717 - GFF1599 0.59 +0.2 197,860 + GFF1599 0.74 +0.0 197,887 + GFF1599 0.76 -1.3 197,983 + GFF1599 0.86 +1.4 197,984 - GFF1599 0.86 -0.8 197,984 - GFF1599 0.86 +0.6 197,999 - GFF1599 0.88 +0.8 197,999 - GFF1599 0.88 -0.0 197,999 - GFF1599 0.88 -1.1 197,999 - GFF1599 0.88 +2.7 197,999 - GFF1599 0.88 +0.6 198,073 + -0.7 198,073 + -0.3 198,074 - -0.1 198,074 - -0.9 198,074 - -1.1 198,106 + +0.2 198,106 + -0.6 198,107 - +0.6 198,107 - -0.2 198,107 - +0.4
Or see this region's nucleotide sequence