Strain Fitness in Variovorax sp. SCN45 around GFF1474

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
65,441	+		GFF1473	0.56	+0.2
65,442	-		GFF1473	0.56	-0.6
65,442	-		GFF1473	0.56	-0.9
65,447	+		GFF1473	0.56	+0.2
65,447	+		GFF1473	0.56	-1.3
65,448	-		GFF1473	0.57	-1.0
65,448	-		GFF1473	0.57	-0.5
65,805	-		GFF1473	0.82	+0.4
65,815	+		GFF1473	0.83	-0.2
65,815	+		GFF1473	0.83	+0.2
65,816	-		GFF1473	0.83	-0.1
65,938	+				-1.1
66,049	+				+0.1
66,163	+				-0.7
66,163	+				-1.3
66,175	-				-0.1
66,206	-				-1.4
66,490	+		GFF1474	0.35	-2.7
66,490	+		GFF1474	0.35	-0.6
66,490	+		GFF1474	0.35	-0.1
66,553	+		GFF1474	0.42	-0.4
67,073	-				+0.8
67,073	-				+0.7
67,073	-				+0.1
67,175	-		GFF1475	0.10	-1.5
67,318	-		GFF1475	0.33	-1.5
67,807	+				-0.9
67,807	+				-0.3
67,808	-				+0.1
67,808	-				+1.0
67,849	+				+0.1
67,849	+				+1.1
67,850	-				+0.2
67,953	-		GFF1476	0.16	-0.3
67,953	-		GFF1476	0.16	+1.0
68,068	+		GFF1476	0.31	-0.5
68,069	-		GFF1476	0.31	-0.9
68,069	-		GFF1476	0.31	-0.3
68,069	-		GFF1476	0.31	+0.1
68,069	-		GFF1476	0.31	+0.7
68,072	+		GFF1476	0.31	+0.5
68,072	+		GFF1476	0.31	+0.8
68,073	-		GFF1476	0.32	-0.9