Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1440 and GFF1441 are separated by 104 nucleotides GFF1441 and GFF1442 are separated by 161 nucleotides GFF1442 and GFF1443 are separated by 28 nucleotides
GFF1440 - Multidomain signal transduction protein including CheB-like methylesterase, CheR-like methyltransferase and BaeS-like histidine kinase, at 30,465 to 32,408
GFF1440
GFF1441 - putative membrane protein, at 32,513 to 33,013
GFF1441
GFF1442 - no description, at 33,175 to 33,558
GFF1442
GFF1443 - Excinuclease ABC subunit A paralog of unknown function, at 33,587 to 36,220
GFF1443
Position (kb) 32
33
34 Strain fitness (log2 ratio) -2
-1
0
1
2 at 31.944 kb on + strand, within GFF1440 at 31.944 kb on + strand, within GFF1440 at 31.945 kb on - strand, within GFF1440 at 31.958 kb on - strand, within GFF1440 at 32.334 kb on + strand at 32.334 kb on + strand at 32.591 kb on + strand, within GFF1441 at 32.592 kb on - strand, within GFF1441 at 32.592 kb on - strand, within GFF1441 at 32.940 kb on - strand, within GFF1441 at 32.940 kb on - strand, within GFF1441 at 32.940 kb on - strand, within GFF1441 at 32.940 kb on - strand, within GFF1441 at 33.113 kb on + strand at 33.113 kb on + strand at 33.114 kb on - strand at 33.627 kb on + strand at 33.628 kb on - strand at 33.746 kb on + strand at 33.747 kb on - strand at 33.768 kb on - strand at 33.788 kb on + strand at 33.788 kb on + strand at 33.944 kb on + strand, within GFF1443 at 33.986 kb on + strand, within GFF1443 at 33.986 kb on + strand, within GFF1443 at 33.987 kb on - strand, within GFF1443
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 31,944 + GFF1440 0.76 +0.3 31,944 + GFF1440 0.76 +1.7 31,945 - GFF1440 0.76 +0.2 31,958 - GFF1440 0.77 +0.2 32,334 + -0.9 32,334 + -0.9 32,591 + GFF1441 0.16 +2.2 32,592 - GFF1441 0.16 -0.1 32,592 - GFF1441 0.16 +0.1 32,940 - GFF1441 0.85 +0.9 32,940 - GFF1441 0.85 -0.1 32,940 - GFF1441 0.85 -0.4 32,940 - GFF1441 0.85 -0.6 33,113 + +0.7 33,113 + -0.7 33,114 - +0.1 33,627 + -0.5 33,628 - -2.1 33,746 + +0.5 33,747 - -0.2 33,768 - -0.1 33,788 + +0.3 33,788 + +2.0 33,944 + GFF1443 0.14 +0.7 33,986 + GFF1443 0.15 -0.2 33,986 + GFF1443 0.15 +0.2 33,987 - GFF1443 0.15 -0.1
Or see this region's nucleotide sequence