Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1433 and GFF1434 are separated by 21 nucleotides GFF1434 and GFF1435 are separated by 109 nucleotides GFF1435 and GFF1436 are separated by 52 nucleotides
GFF1433 - hypothetical protein, at 23,364 to 24,764
GFF1433
GFF1434 - hypothetical protein, at 24,786 to 25,469
GFF1434
GFF1435 - BUG/TctC family periplasmic protein, at 25,579 to 26,580
GFF1435
GFF1436 - CaiB/BaiF family protein, at 26,633 to 27,841
GFF1436
Position (kb) 25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.675 kb on + strand at 25.309 kb on + strand, within GFF1434 at 25.321 kb on + strand, within GFF1434 at 25.321 kb on + strand, within GFF1434 at 25.462 kb on + strand at 25.463 kb on - strand at 25.463 kb on - strand at 25.463 kb on - strand at 25.511 kb on + strand at 25.511 kb on + strand at 25.511 kb on + strand at 25.512 kb on - strand at 25.512 kb on - strand at 25.548 kb on + strand at 25.548 kb on + strand at 26.090 kb on + strand, within GFF1435 at 26.091 kb on - strand, within GFF1435 at 26.195 kb on + strand, within GFF1435 at 26.195 kb on + strand, within GFF1435 at 26.195 kb on + strand, within GFF1435 at 26.195 kb on + strand, within GFF1435 at 26.196 kb on - strand, within GFF1435 at 26.196 kb on - strand, within GFF1435 at 26.234 kb on + strand, within GFF1435 at 26.249 kb on + strand, within GFF1435 at 26.250 kb on - strand, within GFF1435 at 26.770 kb on - strand, within GFF1436 at 26.770 kb on - strand, within GFF1436 at 27.123 kb on + strand, within GFF1436 at 27.195 kb on + strand, within GFF1436 at 27.195 kb on + strand, within GFF1436 at 27.195 kb on + strand, within GFF1436 at 27.196 kb on - strand, within GFF1436 at 27.198 kb on + strand, within GFF1436 at 27.198 kb on + strand, within GFF1436 at 27.199 kb on - strand, within GFF1436 at 27.225 kb on + strand, within GFF1436 at 27.225 kb on + strand, within GFF1436 at 27.226 kb on - strand, within GFF1436 at 27.273 kb on + strand, within GFF1436 at 27.273 kb on + strand, within GFF1436 at 27.274 kb on - strand, within GFF1436 at 27.303 kb on + strand, within GFF1436 at 27.303 kb on + strand, within GFF1436 at 27.304 kb on - strand, within GFF1436 at 27.304 kb on - strand, within GFF1436 at 27.304 kb on - strand, within GFF1436 at 27.304 kb on - strand, within GFF1436 at 27.304 kb on - strand, within GFF1436 at 27.411 kb on + strand, within GFF1436 at 27.412 kb on - strand, within GFF1436 at 27.412 kb on - strand, within GFF1436 at 27.465 kb on + strand, within GFF1436 at 27.465 kb on + strand, within GFF1436 at 27.465 kb on + strand, within GFF1436 at 27.465 kb on + strand, within GFF1436 at 27.465 kb on + strand, within GFF1436 at 27.502 kb on - strand, within GFF1436
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 24,675 + +1.0 25,309 + GFF1434 0.76 +0.8 25,321 + GFF1434 0.78 +0.7 25,321 + GFF1434 0.78 +0.6 25,462 + +0.3 25,463 - +0.2 25,463 - -0.2 25,463 - -0.3 25,511 + -0.4 25,511 + +1.4 25,511 + -0.1 25,512 - +1.0 25,512 - -0.0 25,548 + -0.2 25,548 + -0.1 26,090 + GFF1435 0.51 +0.7 26,091 - GFF1435 0.51 -0.3 26,195 + GFF1435 0.61 +0.2 26,195 + GFF1435 0.61 +1.3 26,195 + GFF1435 0.61 -0.1 26,195 + GFF1435 0.61 +0.7 26,196 - GFF1435 0.62 +0.1 26,196 - GFF1435 0.62 +0.5 26,234 + GFF1435 0.65 -0.0 26,249 + GFF1435 0.67 +0.4 26,250 - GFF1435 0.67 -0.2 26,770 - GFF1436 0.11 +0.1 26,770 - GFF1436 0.11 -0.9 27,123 + GFF1436 0.41 +0.9 27,195 + GFF1436 0.46 -0.3 27,195 + GFF1436 0.46 +0.8 27,195 + GFF1436 0.46 +0.9 27,196 - GFF1436 0.47 -1.1 27,198 + GFF1436 0.47 +1.3 27,198 + GFF1436 0.47 -0.0 27,199 - GFF1436 0.47 +0.2 27,225 + GFF1436 0.49 -0.3 27,225 + GFF1436 0.49 -0.7 27,226 - GFF1436 0.49 +0.3 27,273 + GFF1436 0.53 +0.2 27,273 + GFF1436 0.53 -0.0 27,274 - GFF1436 0.53 +0.1 27,303 + GFF1436 0.55 -0.5 27,303 + GFF1436 0.55 +1.2 27,304 - GFF1436 0.56 -0.1 27,304 - GFF1436 0.56 -0.2 27,304 - GFF1436 0.56 -0.6 27,304 - GFF1436 0.56 +0.0 27,304 - GFF1436 0.56 +1.7 27,411 + GFF1436 0.64 +0.2 27,412 - GFF1436 0.64 -0.6 27,412 - GFF1436 0.64 +0.5 27,465 + GFF1436 0.69 +1.9 27,465 + GFF1436 0.69 -3.0 27,465 + GFF1436 0.69 +0.1 27,465 + GFF1436 0.69 -0.3 27,465 + GFF1436 0.69 +1.7 27,502 - GFF1436 0.72 -1.3
Or see this region's nucleotide sequence